Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HC362_RS22240 Genome accession   NZ_CP050693
Coordinates   5084347..5084952 (+) Length   201 a.a.
NCBI ID   WP_209238803.1    Uniprot ID   A0ABS3X8L1
Organism   Streptomyces sp. 891-h     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5079347..5089952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC362_RS22215 (HC362_22130) - 5080008..5081204 (-) 1197 WP_243085758.1 acyltransferase family protein -
  HC362_RS22220 (HC362_22135) - 5081770..5081964 (+) 195 WP_243085759.1 hypothetical protein -
  HC362_RS22235 (HC362_22150) tig 5082552..5083982 (+) 1431 WP_243085760.1 trigger factor -
  HC362_RS22240 (HC362_22155) clpP 5084347..5084952 (+) 606 WP_209238803.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HC362_RS22245 (HC362_22160) clpP 5085023..5085682 (+) 660 WP_209263156.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HC362_RS22250 (HC362_22165) clpX 5085858..5087141 (+) 1284 WP_209263157.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HC362_RS22255 (HC362_22170) - 5087214..5088005 (-) 792 WP_243085761.1 hypothetical protein -
  HC362_RS22260 (HC362_22175) - 5088013..5088930 (-) 918 WP_243085762.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21403.13 Da        Isoelectric Point: 4.4863

>NTDB_id=381739 HC362_RS22240 WP_209238803.1 5084347..5084952(+) (clpP) [Streptomyces sp. 891-h]
MPSAAGEPNFGGGLGDQVYNRLLDERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSVQAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLTAGTPGKRFALPNADILIHQPSAGLAGSATDIKIHAEQLLRTKKRLAELSAAHSGQTVE
QWTRDADRDRWFTAEEAREYGLIDEVYGNAAQLPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=381739 HC362_RS22240 WP_209238803.1 5084347..5084952(+) (clpP) [Streptomyces sp. 891-h]
ATGCCTTCCGCCGCCGGCGAGCCCAACTTCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGACGAGCGCAT
CATTTTCCTCGGCCAGCCGGTGGACGACGATATCGCCAACAAGATCACCGCCCAGCTTCTGCTCCTTGCCGCCGACCCGG
ACAAGGACATCTTCCTGTACATCAACAGCCCGGGTGGTTCGGTCCAGGCGGGCATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGATGTCGTCACCATCGCCATGGGCCTGGCCGCCTCCATGGGGCAGTTCCTGCTGACCGCGGGCACGCCCGG
CAAGCGGTTCGCGCTGCCCAACGCCGACATCCTCATCCACCAGCCCTCCGCGGGCCTGGCGGGCTCGGCCACCGACATCA
AGATCCATGCCGAGCAGCTGCTGCGTACCAAGAAGAGGCTGGCCGAGCTGTCGGCCGCGCACAGCGGGCAGACCGTCGAG
CAGTGGACCCGCGACGCGGACCGCGACCGCTGGTTCACGGCCGAGGAGGCGCGCGAGTACGGCCTCATCGACGAGGTCTA
CGGCAACGCCGCGCAGCTCCCCGGCGGTGGCGGCACGGGTGCGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

54.545

93.035

0.507
  clpP Lactococcus lactis subsp. cremoris KW2

56.571

87.065

0.493
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56

87.065

0.488
  clpP Streptococcus mutans UA159

54.857

87.065

0.478
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.294

84.577

0.468
  clpP Streptococcus pyogenes MGAS315

53.714

87.065

0.468
  clpP Streptococcus pyogenes JRS4

53.714

87.065

0.468
  clpP Streptococcus thermophilus LMG 18311

53.714

87.065

0.468
  clpP Streptococcus thermophilus LMD-9

53.714

87.065

0.468
  clpP Streptococcus pneumoniae Rx1

53.143

87.065

0.463
  clpP Streptococcus pneumoniae D39

53.143

87.065

0.463
  clpP Streptococcus pneumoniae R6

53.143

87.065

0.463
  clpP Streptococcus pneumoniae TIGR4

53.143

87.065

0.463