Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HB370_RS14690 Genome accession   NZ_CP050504
Coordinates   3268458..3269063 (-) Length   201 a.a.
NCBI ID   WP_030790409.1    Uniprot ID   A0ABW6YNL0
Organism   Streptomyces sp. DSM 40868     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3263458..3274063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB370_RS14675 (HB370_14675) - 3265211..3266194 (+) 984 WP_030790414.1 membrane protein -
  HB370_RS14680 (HB370_14680) clpX 3266268..3267554 (-) 1287 WP_014672712.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HB370_RS14685 (HB370_14685) clpP 3267725..3268390 (-) 666 WP_030608200.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HB370_RS14690 (HB370_14690) clpP 3268458..3269063 (-) 606 WP_030790409.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HB370_RS14695 (HB370_14695) tig 3269405..3270775 (-) 1371 WP_030790407.1 trigger factor -
  HB370_RS14710 (HB370_14710) - 3271842..3272036 (-) 195 WP_030790404.1 hypothetical protein -
  HB370_RS14715 (HB370_14715) - 3272414..3273604 (+) 1191 WP_030790401.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21339.21 Da        Isoelectric Point: 4.5666

>NTDB_id=381011 HB370_RS14690 WP_030790409.1 3268458..3269063(-) (clpP) [Streptomyces sp. DSM 40868]
MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQQVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSVTAGMAIYDTMQY
IPNDVVTIAMGMAASMGQFLLTGGSAGKRFALPHADIMMHQGSAGLGGTVSDIKIQAEYLMRTKKRMSELTAFHSGQSVE
TIIRDGDRDRWFTPEEAKEYGLIDEIITHASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=381011 HB370_RS14690 WP_030790409.1 3268458..3269063(-) (clpP) [Streptomyces sp. DSM 40868]
ATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCAGGTTGACGACGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTTGCCGCCGATCCGG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCCCGAACGACGTGGTCACCATCGCGATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCACCGGCGGCAGCGCCGG
CAAGCGCTTCGCCCTGCCGCACGCGGACATCATGATGCACCAGGGCTCCGCCGGCCTCGGCGGTACGGTCTCGGACATCA
AGATCCAGGCCGAGTACCTGATGCGCACCAAGAAGCGCATGTCGGAGCTGACCGCGTTCCACTCCGGTCAGTCCGTCGAG
ACGATCATCCGCGACGGCGACCGCGACCGCTGGTTCACCCCGGAAGAGGCCAAGGAGTACGGTCTCATTGACGAGATCAT
CACGCACGCCTCGGGTGTTCCGGGAGGCGGCGGCACCGGTGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

50.532

93.532

0.473
  clpP Bacillus subtilis subsp. subtilis str. 168

54.913

86.07

0.473
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50

93.532

0.468
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.27

92.04

0.463
  clpP Streptococcus pneumoniae D39

50.847

88.06

0.448
  clpP Streptococcus pneumoniae Rx1

50.847

88.06

0.448
  clpP Streptococcus pneumoniae R6

50.847

88.06

0.448
  clpP Streptococcus pneumoniae TIGR4

50.847

88.06

0.448
  clpP Streptococcus thermophilus LMG 18311

50.857

87.065

0.443
  clpP Streptococcus thermophilus LMD-9

50.857

87.065

0.443
  clpP Streptococcus mutans UA159

50.286

87.065

0.438
  clpP Streptococcus pyogenes JRS4

50.289

86.07

0.433
  clpP Streptococcus pyogenes MGAS315

50.289

86.07

0.433