Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HB370_RS14685 Genome accession   NZ_CP050504
Coordinates   3267725..3268390 (-) Length   221 a.a.
NCBI ID   WP_030608200.1    Uniprot ID   A0ABW0WEB3
Organism   Streptomyces sp. DSM 40868     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3262725..3273390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB370_RS14675 (HB370_14675) - 3265211..3266194 (+) 984 WP_030790414.1 membrane protein -
  HB370_RS14680 (HB370_14680) clpX 3266268..3267554 (-) 1287 WP_014672712.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HB370_RS14685 (HB370_14685) clpP 3267725..3268390 (-) 666 WP_030608200.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HB370_RS14690 (HB370_14690) clpP 3268458..3269063 (-) 606 WP_030790409.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HB370_RS14695 (HB370_14695) tig 3269405..3270775 (-) 1371 WP_030790407.1 trigger factor -
  HB370_RS14710 (HB370_14710) - 3271842..3272036 (-) 195 WP_030790404.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24481.90 Da        Isoelectric Point: 4.7304

>NTDB_id=381010 HB370_RS14685 WP_030608200.1 3267725..3268390(-) (clpP) [Streptomyces sp. DSM 40868]
MSNFPGAASGMYEGPRPDSRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDIS
IYINSPGGDMTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNSRVLIHQPAGSTGRGQLSDLEIIA
NEFTRMREQLENMLAKHSNRPLEKVREDIERDKILTAEEALEYGLVDQIISTRKLNNAAVR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=381010 HB370_RS14685 WP_030608200.1 3267725..3268390(-) (clpP) [Streptomyces sp. DSM 40868]
ATGAGCAACTTCCCCGGCGCCGCCAGCGGTATGTACGAGGGCCCCCGGCCCGACAGCCGCTACGTCATCCCGCGCTTCGT
CGAGCGCACCTCCCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTGGGCGTCC
AGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCCGACCGGGACATCTCG
ATCTACATCAACAGCCCCGGCGGGGACATGACCGCGCTGACGGCGATCTACGACACGATGCAGTTCGTGAAGCCCGACAT
CCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCATCCTGCTGGCCGCCGGCACGCCCGGCAAGCGCATGGCGC
TGCCGAACTCCCGGGTGCTGATCCACCAGCCGGCCGGCTCCACCGGCCGCGGTCAGCTGTCCGACCTCGAGATCATCGCC
AACGAGTTCACCCGGATGCGCGAGCAGCTGGAGAACATGCTGGCCAAGCACTCGAACCGGCCGCTCGAGAAGGTCCGCGA
GGACATCGAGCGCGACAAGATCCTCACGGCCGAGGAGGCGCTGGAGTACGGCCTCGTCGACCAGATCATCTCCACCCGCA
AGCTGAACAACGCCGCCGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(32-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

85.973

0.443
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

85.068

0.421
  clpP Streptococcus thermophilus LMD-9

45.641

88.235

0.403
  clpP Streptococcus thermophilus LMG 18311

45.641

88.235

0.403
  clpP Lactococcus lactis subsp. cremoris KW2

45.408

88.688

0.403
  clpP Streptococcus pneumoniae Rx1

44.388

88.688

0.394
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.388

88.688

0.394
  clpP Streptococcus pneumoniae D39

44.388

88.688

0.394
  clpP Streptococcus pneumoniae R6

44.388

88.688

0.394
  clpP Streptococcus pneumoniae TIGR4

44.388

88.688

0.394
  clpP Streptococcus mutans UA159

43.59

88.235

0.385
  clpP Streptococcus pyogenes JRS4

42.564

88.235

0.376
  clpP Streptococcus pyogenes MGAS315

42.564

88.235

0.376

Multiple sequence alignment