Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GALF_RS01505 Genome accession   NC_014394
Coordinates   339125..340336 (-) Length   403 a.a.
NCBI ID   WP_013292281.1    Uniprot ID   D9SJ62
Organism   Gallionella capsiferriformans ES-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334125..345336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALF_RS01475 (Galf_0286) - 334338..334955 (+) 618 WP_396230358.1 Gx transporter family protein -
  GALF_RS01480 (Galf_0287) - 334971..335603 (+) 633 WP_013292275.1 flavin prenyltransferase UbiX -
  GALF_RS01485 (Galf_0288) - 335600..336544 (+) 945 WP_013292276.1 Nudix family hydrolase -
  GALF_RS15190 (Galf_0289) - 336532..336723 (-) 192 WP_013292277.1 DNA gyrase inhibitor YacG -
  GALF_RS01490 (Galf_0290) zapD 336720..337481 (-) 762 WP_013292278.1 cell division protein ZapD -
  GALF_RS01495 (Galf_0291) coaE 337541..338173 (-) 633 WP_013292279.1 dephospho-CoA kinase -
  GALF_RS01500 (Galf_0292) pilD 338170..339036 (-) 867 WP_013292280.1 A24 family peptidase Machinery gene
  GALF_RS01505 (Galf_0293) pilC 339125..340336 (-) 1212 WP_013292281.1 type II secretion system F family protein Machinery gene
  GALF_RS01510 (Galf_0294) - 340473..341663 (-) 1191 WP_263053277.1 HlyC/CorC family transporter -
  GALF_RS16005 - 341650..341784 (+) 135 WP_263053278.1 hypothetical protein -
  GALF_RS01515 (Galf_0295) lgt 341803..342591 (-) 789 WP_013292283.1 prolipoprotein diacylglyceryl transferase -
  GALF_RS01520 (Galf_0296) ilvD 342649..344496 (+) 1848 WP_013292284.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 44214.97 Da        Isoelectric Point: 9.6363

>NTDB_id=38097 GALF_RS01505 WP_013292281.1 339125..340336(-) (pilC) [Gallionella capsiferriformans ES-2]
MAVAQQKAKEYTYTWEGKDKSGKLVKGEMRSIGEANLSAYLRRQGITVAKIKRARSSAKAITQKDITLFTRQLATMLKAG
VPLLQAFDIVGKGHHNPSVSRLLFSIKTDIETGSSLQQAFKKHPLYFDDLYCNLIGAGESAGILDSLLERLATYQEKILA
IKSKIKSALFYPVSIIVVAFIITAVIMIFVIPAFKELFSSFGADLPAPTLFIMAISDFFVSYWWAIFGGIGGGFYTFFYF
LKRSRPMQHLMDRVLLKLPIFGELVKKATIARWSRTLSTMFAAGVPLVEAFNSVAGAAGNAVYFDATKSIQREVSTGNSL
TVAMQNTEVFPSMVIQMVSIGEEAGSLDAMLSKVADFYEAEVDDAVEALSSLMEPIIMVVLGTLIGGMVVAMYLPIFKMG
QVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=38097 GALF_RS01505 WP_013292281.1 339125..340336(-) (pilC) [Gallionella capsiferriformans ES-2]
ATGGCTGTCGCACAACAAAAAGCAAAAGAATACACCTACACTTGGGAAGGCAAAGACAAGTCCGGCAAGTTAGTCAAAGG
TGAAATGCGATCCATCGGCGAAGCCAATTTGTCCGCCTATCTGCGCCGTCAGGGTATTACCGTTGCCAAAATAAAACGAG
CGCGCAGCAGCGCCAAAGCAATCACACAAAAAGACATCACCTTGTTCACAAGGCAACTAGCGACCATGCTAAAAGCCGGT
GTACCGCTATTGCAGGCGTTCGATATCGTCGGCAAAGGGCATCACAACCCGTCCGTTTCAAGACTGTTGTTTTCGATCAA
AACGGATATTGAAACCGGCAGCAGCCTGCAACAAGCCTTCAAAAAACATCCCCTCTATTTCGATGATTTGTATTGCAATC
TGATTGGTGCCGGCGAATCGGCAGGTATTCTGGATAGTTTGCTCGAGCGCCTGGCGACTTATCAGGAAAAGATTCTAGCC
ATCAAGAGCAAAATCAAATCCGCCCTGTTCTATCCGGTTTCGATTATCGTGGTGGCCTTCATCATCACGGCCGTGATCAT
GATTTTCGTCATTCCCGCATTTAAGGAATTATTCTCAAGCTTCGGCGCTGATTTGCCGGCCCCGACCTTGTTCATCATGG
CCATTTCAGATTTCTTCGTCAGCTACTGGTGGGCCATTTTCGGCGGCATAGGCGGGGGCTTCTACACTTTCTTCTATTTC
CTGAAGCGTAGCCGCCCGATGCAGCACTTGATGGACAGGGTGCTCCTTAAACTTCCCATTTTCGGGGAACTGGTAAAAAA
AGCCACCATCGCGCGCTGGAGCCGCACTTTATCCACAATGTTCGCGGCTGGCGTGCCGCTGGTCGAAGCCTTTAATTCGG
TCGCGGGTGCTGCGGGTAATGCCGTGTATTTTGATGCGACCAAGAGCATACAGCGCGAAGTGAGCACCGGTAACAGCCTG
ACCGTCGCCATGCAAAATACCGAAGTATTCCCAAGCATGGTGATCCAGATGGTGTCGATCGGCGAAGAAGCCGGCTCCCT
TGATGCGATGCTCTCCAAGGTCGCCGACTTTTACGAAGCCGAGGTGGACGACGCCGTCGAAGCACTCTCAAGCCTCATGG
AACCCATCATCATGGTCGTGCTGGGCACTTTGATCGGCGGCATGGTGGTGGCGATGTATCTGCCTATCTTCAAGATGGGC
CAAGTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9SJ62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.904

98.511

0.531
  pilG Neisseria gonorrhoeae MS11

53.401

98.511

0.526
  pilG Neisseria meningitidis 44/76-A

53.149

98.511

0.524
  pilC Pseudomonas stutzeri DSM 10701

49.136

100

0.494
  pilC Acinetobacter baumannii D1279779

48.995

98.759

0.484
  pilC Acinetobacter baylyi ADP1

48.866

98.511

0.481
  pilC Vibrio cholerae strain A1552

40.302

98.511

0.397
  pilC Vibrio campbellii strain DS40M4

38.653

99.504

0.385
  pilC Thermus thermophilus HB27

37.25

99.256

0.37

Multiple sequence alignment