Detailed information NTG0038096

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GALF_RS01500
• Genome accession: NC_014394
• Coordinates: 338170..339036 (-)
• Length: 288 a.a.
• NCBI ID: WP_013292280.1
• Uniprot ID: -
• Organism: Gallionella capsiferriformans ES-2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 333170..344036

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GALF_RS01470 (Galf_0285)	-	333977..334357 (+)	381	WP_013292273.1	NusG domain II-containing protein	-
GALF_RS01475 (Galf_0286)	-	334338..334955 (+)	618	WP_396230358.1	Gx transporter family protein	-
GALF_RS01480 (Galf_0287)	-	334971..335603 (+)	633	WP_013292275.1	flavin prenyltransferase UbiX	-
GALF_RS01485 (Galf_0288)	-	335600..336544 (+)	945	WP_013292276.1	Nudix family hydrolase	-
GALF_RS15190 (Galf_0289)	-	336532..336723 (-)	192	WP_013292277.1	DNA gyrase inhibitor YacG	-
GALF_RS01490 (Galf_0290)	zapD	336720..337481 (-)	762	WP_013292278.1	cell division protein ZapD	-
GALF_RS01495 (Galf_0291)	coaE	337541..338173 (-)	633	WP_013292279.1	dephospho-CoA kinase	-
GALF_RS01500 (Galf_0292)	pilD	338170..339036 (-)	867	WP_013292280.1	A24 family peptidase	Machinery gene
GALF_RS01505 (Galf_0293)	pilC	339125..340336 (-)	1212	WP_013292281.1	type II secretion system F family protein	Machinery gene
GALF_RS01510 (Galf_0294)	-	340473..341663 (-)	1191	WP_263053277.1	HlyC/CorC family transporter	-
GALF_RS16005	-	341650..341784 (+)	135	WP_263053278.1	hypothetical protein	-
GALF_RS01515 (Galf_0295)	lgt	341803..342591 (-)	789	WP_013292283.1	prolipoprotein diacylglyceryl transferase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31375.34 Da
• Isoelectric Point: 6.6172

>NTDB_id=38096 GALF_RS01500 WP_013292280.1 338170..339036(-) (pilD) [Gallionella capsiferriformans ES-2]
MTLFDLLESSAPLFIGTCTLLGLMVGSFLNVVIHRLPKMMELGWRSQCAELRGEAPVESEPYNLLVPRSACPQCQHAIRA
WENIPVISYLLLRGKCSGCHTAISSRYPIIETFSGLLCGFAAFHFGFGLTALAALILIWALIALTAIDFDTQLLPDDITL
PLLWAGLLFNLYGAFTSLHDAFLGAVFGYLALWSVFWLFKLVTGKEGMGYGDFKLLAALGAWLGWQLLPLIIILSSLVGA
IIGIALIIAVKRGREIPIPFGPYLAGGGLIALFWGQTLTQSYLQLLAP

Nucleotide

• Length: 867 bp

>NTDB_id=38096 GALF_RS01500 WP_013292280.1 338170..339036(-) (pilD) [Gallionella capsiferriformans ES-2]
ATGACCTTATTCGACTTACTTGAATCATCCGCCCCCCTGTTTATCGGCACCTGCACGCTGCTAGGACTGATGGTTGGCAG
TTTTCTGAACGTGGTCATTCATCGCCTGCCCAAGATGATGGAACTGGGCTGGCGGTCGCAATGTGCCGAGTTGCGCGGCG
AAGCACCCGTGGAGAGTGAACCGTACAATCTGCTGGTGCCGCGCTCCGCCTGCCCGCAGTGTCAGCACGCCATCCGTGCA
TGGGAAAACATCCCTGTGATCAGCTATCTGCTGCTGCGCGGCAAGTGTTCCGGCTGTCATACGGCCATATCCTCCCGCTA
CCCGATCATCGAGACTTTCAGCGGTCTGCTCTGCGGATTTGCAGCATTTCATTTCGGTTTCGGACTGACCGCCCTCGCGG
CCCTTATCCTGATCTGGGCGTTAATCGCGTTGACGGCGATCGACTTTGACACCCAGTTACTACCTGACGACATCACCCTG
CCGCTACTGTGGGCCGGACTGCTGTTCAATCTGTACGGCGCTTTTACTTCATTGCATGACGCATTCTTAGGCGCCGTGTT
TGGCTACCTCGCCTTGTGGTCGGTATTTTGGCTATTCAAGCTGGTCACCGGCAAAGAAGGCATGGGCTACGGAGACTTTA
AGCTGCTAGCCGCCTTAGGTGCCTGGTTAGGCTGGCAACTGCTGCCACTGATCATCATCCTGTCTTCGCTGGTCGGTGCC
ATCATCGGCATTGCCTTAATCATCGCAGTCAAAAGGGGCCGCGAGATTCCCATTCCGTTCGGGCCATATCTTGCCGGCGG
CGGACTGATCGCACTGTTCTGGGGGCAGACGCTCACACAGAGCTATTTACAGCTATTGGCACCGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	56.569	95.139	0.538
pilD	Vibrio cholerae strain A1552	55.839	95.139	0.531
pilD	Acinetobacter baumannii D1279779	51.254	96.875	0.497
pilD	Acinetobacter nosocomialis M2	50.179	96.875	0.486
pilD	Neisseria gonorrhoeae MS11	52.091	91.319	0.476