Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   TOCE_RS11385 Genome accession   NC_014377
Coordinates   2256390..2256821 (-) Length   143 a.a.
NCBI ID   WP_013276971.1    Uniprot ID   D9S186
Organism   Thermosediminibacter oceani DSM 16646     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2251390..2261821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TOCE_RS11360 (Toce_2251) dnaB 2251668..2253023 (-) 1356 WP_013276966.1 replicative DNA helicase -
  TOCE_RS11365 (Toce_2252) rplI 2253029..2253475 (-) 447 WP_013276967.1 50S ribosomal protein L9 -
  TOCE_RS11370 (Toce_2253) - 2253472..2255142 (-) 1671 WP_013276968.1 DHH family phosphoesterase -
  TOCE_RS11375 (Toce_2254) - 2255160..2256101 (-) 942 WP_013276969.1 YybS family protein -
  TOCE_RS11380 (Toce_2255) rpsR 2256147..2256371 (-) 225 WP_013276970.1 30S ribosomal protein S18 -
  TOCE_RS11385 (Toce_2256) ssbA 2256390..2256821 (-) 432 WP_013276971.1 single-stranded DNA-binding protein Machinery gene
  TOCE_RS11390 (Toce_2257) rpsF 2256835..2257122 (-) 288 WP_013276972.1 30S ribosomal protein S6 -
  TOCE_RS11395 (Toce_2258) - 2257189..2257374 (-) 186 WP_049817975.1 DUF951 domain-containing protein -
  TOCE_RS11400 (Toce_2259) - 2257401..2258255 (-) 855 WP_013276974.1 mechanosensitive ion channel family protein -
  TOCE_RS11405 (Toce_2260) yedF 2258271..2258876 (-) 606 WP_013276975.1 sulfurtransferase-like selenium metabolism protein YedF -
  TOCE_RS11410 (Toce_2261) - 2258923..2259492 (-) 570 WP_013276976.1 CvpA family protein -
  TOCE_RS11415 (Toce_2262) yyaC 2259655..2260227 (+) 573 WP_013276977.1 spore protease YyaC -
  TOCE_RS11420 (Toce_2263) - 2260381..2261733 (-) 1353 Protein_2240 IS1182 family transposase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15973.87 Da        Isoelectric Point: 4.4857

>NTDB_id=38014 TOCE_RS11385 WP_013276971.1 2256390..2256821(-) (ssbA) [Thermosediminibacter oceani DSM 16646]
MNKVILIGRLTKDPELRFTPANGVAVATFTLAVDRPFINQKGEREADFIPVVVWRKLAETCANNLKKGRLVGVSGRLQVR
SYDTPGGQRRWVTEVVADEVQFLDRPRSAEPNSGFSGNNEGIEDIDFDFDFDENVSEGDDVPF

Nucleotide


Download         Length: 432 bp        

>NTDB_id=38014 TOCE_RS11385 WP_013276971.1 2256390..2256821(-) (ssbA) [Thermosediminibacter oceani DSM 16646]
TTGAACAAGGTTATTCTAATAGGGAGGTTGACGAAAGACCCCGAACTGCGGTTCACCCCTGCTAACGGAGTGGCGGTGGC
CACCTTCACCCTGGCGGTGGATAGGCCCTTTATAAACCAAAAGGGTGAGCGCGAAGCCGACTTTATACCCGTAGTGGTAT
GGAGGAAGCTGGCGGAAACCTGTGCCAACAACCTCAAGAAGGGCCGGCTGGTGGGCGTATCCGGGAGGCTTCAGGTGAGG
TCCTACGATACGCCCGGCGGGCAGCGGCGCTGGGTTACCGAAGTGGTCGCCGATGAAGTGCAGTTTTTAGACAGGCCCAG
ATCGGCCGAACCGAATTCTGGTTTCAGTGGGAACAACGAGGGAATCGAAGATATAGATTTTGATTTCGATTTCGATGAAA
ACGTATCCGAAGGCGACGATGTACCTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9S186

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.308

72.727

0.49
  ssb Latilactobacillus sakei subsp. sakei 23K

53.509

79.72

0.427
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.009

74.825

0.427
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.667

100

0.42
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.549

99.301

0.413
  ssbB/cilA Streptococcus pneumoniae Rx1

40.845

99.301

0.406
  ssbB/cilA Streptococcus pneumoniae D39

40.845

99.301

0.406
  ssbB/cilA Streptococcus pneumoniae R6

40.845

99.301

0.406
  ssbB/cilA Streptococcus mitis NCTC 12261

40.845

99.301

0.406
  ssbB/cilA Streptococcus mitis SK321

40.845

99.301

0.406

Multiple sequence alignment