Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FR741_RS00255 Genome accession   NZ_CP042451
Coordinates   50004..51113 (+) Length   369 a.a.
NCBI ID   WP_167426117.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FA3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 45004..56113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR741_RS00235 (FR741_00240) rsmB 45924..47207 (-) 1284 WP_167426115.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  FR741_RS00240 (FR741_00245) fmt 47288..48235 (-) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  FR741_RS00245 (FR741_00250) def 48269..48787 (-) 519 WP_005379068.1 peptide deformylase -
  FR741_RS00250 (FR741_00255) - 48926..50020 (+) 1095 WP_167426116.1 LysM peptidoglycan-binding domain-containing protein -
  FR741_RS00255 (FR741_00260) dprA 50004..51113 (+) 1110 WP_167426117.1 DNA-processing protein DprA Machinery gene
  FR741_RS00260 (FR741_00265) - 51116..51595 (+) 480 WP_005379074.1 DUF494 family protein -
  FR741_RS00265 (FR741_00270) - 51674..52243 (+) 570 WP_167426118.1 type I DNA topoisomerase -
  FR741_RS00270 (FR741_00275) - 52313..53440 (-) 1128 WP_167426119.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FR741_RS00275 (FR741_00280) purE 53445..53930 (-) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FR741_RS00280 (FR741_00285) - 54130..54687 (+) 558 WP_046874602.1 L-threonylcarbamoyladenylate synthase -
  FR741_RS00285 (FR741_00290) hemF 54735..55652 (+) 918 WP_065645011.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40014.70 Da        Isoelectric Point: 6.8794

>NTDB_id=377973 FR741_RS00255 WP_167426117.1 50004..51113(+) (dprA) [Vibrio diabolicus strain FA3]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVEACLSWLEASTNHH
ILTLTDPLYPPQLKQIVAPPPLLFVQGSSTCLSQPQIAMVGSRNASIDGLQHARHFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAKGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAERSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRHGACLVEKTKDVLDEIQSLLGWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=377973 FR741_RS00255 WP_167426117.1 50004..51113(+) (dprA) [Vibrio diabolicus strain FA3]
ATGAATCGAAGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGGGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCGCGTAACATCGTAAACTTCTCTCCCGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTTGAAGCCTGTTTAAGTTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCTTTATCCACCTCAACTCAAACAAATCGTTGCGCCGCCACCTCTGCTTTTTGTGCAAGG
AAGTTCTACTTGTCTTTCGCAGCCACAAATAGCAATGGTTGGCAGCCGAAATGCGAGTATTGATGGCTTACAGCATGCAC
GCCACTTTGCCGCCGAATTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGCCATGCGCAT
GATGGTGCGTTGCAAGCAAAAGGTAAGACGATTGCGGTGCTGGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGTCCCAACGCCAAGCCGCGCCCGGAAAACT
TCCCGCGTCGAAACCGCATTATTAGCGGATTATCGCTAGGTGTGTTAGTTGTGGAAGCGGCGGAAAGGAGTGGCTCGTTA
ATTACTGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTGTTTGCGCTGCCAGCTTCGATAAATGCCCCTAATGCCAGCGG
TGGCAACCAGTTGATACGTCATGGTGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCTTTGCTTG
GTTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.198

100

0.832
  dprA Vibrio cholerae strain A1552

57.297

100

0.575
  dprA Glaesserella parasuis strain SC1401

46.133

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.321

97.832

0.434
  dprA Haemophilus influenzae Rd KW20

45.533

94.038

0.428
  dprA Neisseria meningitidis strain C311

37.121

100

0.398
  dprA Neisseria meningitidis MC58

37.121

100

0.398
  dprA Neisseria gonorrhoeae MS11

35.533

100

0.379
  dprA Neisseria gonorrhoeae strain FA1090

35.279

100

0.377
  dprA Thermus thermophilus HB27

37.36

96.477

0.36

Multiple sequence alignment