Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FR838_RS12140 Genome accession   NZ_CP042364
Coordinates   2511477..2512703 (-) Length   408 a.a.
NCBI ID   WP_005079343.1    Uniprot ID   A0A009R5F8
Organism   Acinetobacter pittii strain C54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2506477..2517703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR838_RS12110 (FR838_12110) - 2506507..2507817 (+) 1311 WP_002114682.1 tetratricopeptide repeat protein -
  FR838_RS12115 (FR838_12115) - 2507894..2508220 (+) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  FR838_RS12120 (FR838_12120) rlmB 2508323..2509072 (+) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FR838_RS12125 (FR838_12125) - 2509108..2510022 (+) 915 WP_005079347.1 DMT family transporter -
  FR838_RS12130 (FR838_12130) coaE 2510019..2510615 (-) 597 WP_005065869.1 dephospho-CoA kinase -
  FR838_RS12135 (FR838_12135) pilD 2510617..2511477 (-) 861 WP_005079345.1 prepilin peptidase Machinery gene
  FR838_RS12140 (FR838_12140) pilC 2511477..2512703 (-) 1227 WP_005079343.1 type II secretion system F family protein Machinery gene
  FR838_RS12145 (FR838_12145) pilB 2512730..2514442 (-) 1713 WP_032042313.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FR838_RS12150 (FR838_12150) tpiA 2514734..2515528 (+) 795 WP_005079338.1 triose-phosphate isomerase -
  FR838_RS12155 (FR838_12155) secG 2515541..2515870 (+) 330 WP_002115012.1 preprotein translocase subunit SecG -
  FR838_RS12175 (FR838_12175) rimP 2516508..2517032 (+) 525 WP_002114922.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45027.45 Da        Isoelectric Point: 9.8207

>NTDB_id=377453 FR838_RS12140 WP_005079343.1 2511477..2512703(-) (pilC) [Acinetobacter pittii strain C54]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=377453 FR838_RS12140 WP_005079343.1 2511477..2512703(-) (pilC) [Acinetobacter pittii strain C54]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTATTCAAGAAGAAAGTATCAACACTCGATATCACAATTTTTACTAGGCAACTTGCAACG
ATGATGAAAGCAGGTGTGCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTGGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGAATTAAAGGTGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGGTTAGATAAACTTACACTGAAACTACCTATCTTTGG
CGATCTGGTTTATAAGGCGATTATTGCCCGCTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCTCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACCGGTCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTACTCGTAGGTGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009R5F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.794

100

0.978
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment