Detailed information NTG0377452

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FR838_RS12135
• Genome accession: NZ_CP042364
• Coordinates: 2510617..2511477 (-)
• Length: 286 a.a.
• NCBI ID: WP_005079345.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain C54
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2505617..2516477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FR838_RS12110 (FR838_12110)	-	2506507..2507817 (+)	1311	WP_002114682.1	tetratricopeptide repeat protein	-
FR838_RS12115 (FR838_12115)	-	2507894..2508220 (+)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
FR838_RS12120 (FR838_12120)	rlmB	2508323..2509072 (+)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
FR838_RS12125 (FR838_12125)	-	2509108..2510022 (+)	915	WP_005079347.1	DMT family transporter	-
FR838_RS12130 (FR838_12130)	coaE	2510019..2510615 (-)	597	WP_005065869.1	dephospho-CoA kinase	-
FR838_RS12135 (FR838_12135)	pilD	2510617..2511477 (-)	861	WP_005079345.1	prepilin peptidase	Machinery gene
FR838_RS12140 (FR838_12140)	pilC	2511477..2512703 (-)	1227	WP_005079343.1	type II secretion system F family protein	Machinery gene
FR838_RS12145 (FR838_12145)	pilB	2512730..2514442 (-)	1713	WP_032042313.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FR838_RS12150 (FR838_12150)	tpiA	2514734..2515528 (+)	795	WP_005079338.1	triose-phosphate isomerase	-
FR838_RS12155 (FR838_12155)	secG	2515541..2515870 (+)	330	WP_002115012.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32183.67 Da
• Isoelectric Point: 7.1044

>NTDB_id=377452 FR838_RS12135 WP_005079345.1 2510617..2511477(-) (pilD) [Acinetobacter pittii strain C54]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=377452 FR838_RS12135 WP_005079345.1 2510617..2511477(-) (pilD) [Acinetobacter pittii strain C54]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTGTTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTGATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACAACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGTTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCCGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCTATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTACTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTTGGTGCAATTATTGGCATCATTTTATTAAAATTACGCAATGACAATCAGCCCTTTGCCTTTGGGCCCTACATTGCCAT
TGCAGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.853	100	0.969
pilD	Acinetobacter nosocomialis M2	96.503	100	0.965
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.328	91.608	0.434