Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RPSI07_RS11055 Genome accession   NC_014311
Coordinates   681174..682439 (-) Length   421 a.a.
NCBI ID   WP_013211405.1    Uniprot ID   -
Organism   Ralstonia solanacearum PSI07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 676174..687439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPSI07_RS11025 (RPSI07_0675) - 677243..678127 (+) 885 WP_013211399.1 ATP-binding protein -
  RPSI07_RS11030 (RPSI07_0676) - 678105..678563 (+) 459 WP_048817320.1 NUDIX domain-containing protein -
  RPSI07_RS11035 (RPSI07_0677) - 678560..678775 (-) 216 WP_013211401.1 DNA gyrase inhibitor YacG -
  RPSI07_RS11040 (RPSI07_0678) zapD 678787..679545 (-) 759 WP_013211402.1 cell division protein ZapD -
  RPSI07_RS11045 (RPSI07_0679) coaE 679663..680277 (-) 615 WP_013211403.1 dephospho-CoA kinase -
  RPSI07_RS11050 (RPSI07_0680) pilD 680290..681171 (-) 882 WP_048817321.1 prepilin peptidase Machinery gene
  RPSI07_RS11055 (RPSI07_0681) pilC 681174..682439 (-) 1266 WP_013211405.1 type II secretion system F family protein Machinery gene
  RPSI07_RS11060 (RPSI07_0682) pilF 682484..684211 (-) 1728 WP_013211406.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RPSI07_RS11065 (RPSI07_0683) - 684459..685736 (-) 1278 WP_013211407.1 HlyC/CorC family transporter -
  RPSI07_RS11075 (RPSI07_0684) ispB 686015..686983 (-) 969 WP_013211408.1 octaprenyl diphosphate synthase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46400.60 Da        Isoelectric Point: 10.4051

>NTDB_id=37733 RPSI07_RS11055 WP_013211405.1 681174..682439(-) (pilC) [Ralstonia solanacearum PSI07]
MATRAPTANRSAAASARKTAAKKAPTQYIFEWEGKDRKGKAFKGEMRAENLAEVNATLRKQGLSITKSKRRRAARGKKIT
PKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDIESGSSMAQAFRRHPKYFDSLYCNLIDAGEQGG
ILDALLERLSLYMEKSIALKAQIKSAMIYPISVLTVAFLVTVVLMIFVVPAFKGVFASFGATLPAPTLVVMGISDFFVQW
WYIIVFTPIIGIILYARAFKRSEKVQRNTHKAILKMPIFGSIIRKATIARWTRTLATMFSAGTPLVESMESVAGAAGNWV
YHDATIEIQQAVRIGTSLTNAMQATHVFDNMVLQMTQIGEESGALDNMLLKVAEFYEREVDDAVANISALIEPLIIVILG
VLIGGMVVAMYLPIFKLGQVV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=37733 RPSI07_RS11055 WP_013211405.1 681174..682439(-) (pilC) [Ralstonia solanacearum PSI07]
ATGGCCACACGAGCACCGACCGCGAACCGGTCTGCCGCCGCATCGGCACGCAAGACCGCCGCCAAGAAGGCGCCCACGCA
ATACATCTTCGAGTGGGAAGGCAAGGACCGCAAAGGCAAAGCCTTCAAGGGCGAGATGCGGGCGGAGAACCTCGCCGAAG
TCAACGCCACGCTGCGCAAGCAAGGTCTGTCGATCACCAAGTCCAAGCGTCGGCGCGCAGCACGCGGCAAGAAGATCACG
CCGAAAGACATCGCCTACTTCACGCGCCAGCTGTCGACCATGCTGAAGGCCGGGGTGCCGCTGCTGCAATCGGTCGACAT
CATCGCGCGCGGCCATGCCAACCCGAACTTCACCCAGCTGCTGACGGAAATCCGCGTCGACATCGAGTCGGGCAGCAGCA
TGGCGCAGGCCTTCCGCCGCCATCCGAAGTACTTCGATTCGCTGTACTGCAACCTGATCGACGCGGGTGAACAGGGCGGT
ATTCTCGACGCGCTGCTCGAGCGGCTGTCGCTGTACATGGAAAAGTCGATCGCGCTGAAGGCGCAGATCAAGTCGGCCAT
GATCTATCCGATCTCGGTGCTGACGGTGGCTTTCCTGGTCACGGTGGTGCTGATGATCTTCGTGGTGCCGGCGTTCAAGG
GCGTGTTCGCCAGCTTCGGCGCCACGCTGCCGGCACCGACGCTGGTGGTGATGGGCATCTCGGACTTCTTCGTGCAGTGG
TGGTACATCATCGTCTTCACGCCCATCATCGGCATCATCCTGTACGCACGGGCCTTCAAGCGCTCGGAGAAGGTGCAGCG
CAACACGCACAAGGCCATCCTGAAGATGCCGATCTTCGGCAGCATCATCCGCAAGGCCACCATCGCGCGCTGGACGCGTA
CGCTGGCAACGATGTTCTCCGCCGGGACGCCGCTGGTGGAGTCGATGGAATCCGTGGCGGGGGCGGCGGGCAACTGGGTC
TACCATGACGCCACCATCGAGATCCAGCAGGCGGTGCGCATCGGTACCAGCCTCACCAACGCCATGCAGGCCACCCACGT
GTTCGACAACATGGTGCTGCAGATGACGCAGATCGGCGAGGAATCCGGTGCGCTGGACAACATGCTGCTGAAGGTGGCCG
AATTCTACGAGCGCGAGGTCGATGACGCGGTCGCCAACATCTCCGCCCTGATCGAGCCGCTCATCATCGTGATCCTGGGC
GTGCTGATCGGTGGCATGGTGGTCGCCATGTACCTGCCGATCTTCAAGCTGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

50.248

95.962

0.482
  pilG Neisseria gonorrhoeae MS11

50.877

94.774

0.482
  pilG Neisseria meningitidis 44/76-A

50.627

94.774

0.48
  pilC Acinetobacter baumannii D1279779

48.157

96.675

0.466
  pilC Acinetobacter baylyi ADP1

47.42

96.675

0.458
  pilC Legionella pneumophila strain ERS1305867

46.683

96.675

0.451
  pilC Vibrio campbellii strain DS40M4

39.303

95.487

0.375
  pilC Vibrio cholerae strain A1552

39.25

95.012

0.373

Multiple sequence alignment