Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPSA_RS07275 Genome accession   NC_017361
Coordinates   1530365..1530631 (+) Length   88 a.a.
NCBI ID   WP_001173700.1    Uniprot ID   -
Organism   Helicobacter pylori SouthAfrica7     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1525365..1535631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSA_RS07255 (HPSA_07540) - 1527440..1528219 (+) 780 WP_001158479.1 hypothetical protein -
  HPSA_RS07260 (HPSA_07545) - 1528239..1528532 (+) 294 WP_001160325.1 hypothetical protein -
  HPSA_RS07265 (HPSA_07550) - 1528539..1530065 (+) 1527 WP_000323331.1 hypothetical protein -
  HPSA_RS07270 (HPSA_07555) - 1530062..1530364 (+) 303 WP_000850073.1 hypothetical protein -
  HPSA_RS07275 (HPSA_07560) comB3 1530365..1530631 (+) 267 WP_001173700.1 hypothetical protein Machinery gene
  HPSA_RS07280 (HPSA_07565) comB4 1530678..1533047 (+) 2370 WP_234701622.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPSA_RS07285 (HPSA_07570) - 1533050..1533925 (+) 876 Protein_1415 DNA topoisomerase -
  HPSA_RS07290 (HPSA_07575) tnpA 1533988..1534404 (-) 417 WP_000717711.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10137.93 Da        Isoelectric Point: 4.8782

>NTDB_id=37734 HPSA_RS07275 WP_001173700.1 1530365..1530631(+) (comB3) [Helicobacter pylori SouthAfrica7]
MALHIVCIESTNIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARSYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=37734 HPSA_RS07275 WP_001173700.1 1530365..1530631(+) (comB3) [Helicobacter pylori SouthAfrica7]
ATGGCATTGCATATTGTTTGTATTGAAAGTACCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGGTTAAACTT
GGATAGCTGGATTGTTAGCTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCACGCCCTTTTCACCTTAAGA
ACAGGAGCTAGAAGTTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

41.667

95.455

0.398

Multiple sequence alignment