Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FPK91_RS15845 Genome accession   NZ_CP041783
Coordinates   3668202..3669464 (-) Length   420 a.a.
NCBI ID   WP_144212248.1    Uniprot ID   -
Organism   Shewanella donghaensis strain LT17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3663202..3674464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPK91_RS15820 mutT 3665187..3665579 (-) 393 WP_144212238.1 8-oxo-dGTP diphosphatase MutT -
  FPK91_RS15825 yacG 3665606..3665815 (-) 210 WP_144212240.1 DNA gyrase inhibitor YacG -
  FPK91_RS15830 zapD 3665856..3666593 (-) 738 WP_144212242.1 cell division protein ZapD -
  FPK91_RS15835 coaE 3666599..3667204 (-) 606 WP_144212244.1 dephospho-CoA kinase -
  FPK91_RS15840 pilD 3667249..3668163 (-) 915 WP_144212246.1 A24 family peptidase Machinery gene
  FPK91_RS15845 pilC 3668202..3669464 (-) 1263 WP_144212248.1 type II secretion system F family protein Machinery gene
  FPK91_RS15850 pilB 3669520..3671232 (-) 1713 WP_144212250.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FPK91_RS15855 - 3671353..3671772 (-) 420 WP_144212252.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FPK91_RS15860 nadC 3672665..3673543 (-) 879 WP_144212254.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FPK91_RS15865 ampD 3673837..3674406 (+) 570 WP_144212256.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45689.88 Da        Isoelectric Point: 10.2663

>NTDB_id=374251 FPK91_RS15845 WP_144212248.1 3668202..3669464(-) (pilC) [Shewanella donghaensis strain LT17]
MATATRRSKSKPKKDIKHQPKVFTFEWKGVNRDGQRTSGELRGSTIAEIRGILKSQGVTPKGVRKKSASLFKSEKRITAM
DIAMITRQIATMLSAGVPLVTTIQLLGRGHEKAKVRELLGNILTEVQSGIPLSDALRPHRLYFDDLYVDLVAAGEHSGSL
DAVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAIAVTVLLLLFVVPQFEEIFAGFGAELPAFTQFVLEISRALQSSWY
IIAAILFAMVFTFVRAHRNSQAVRDAVDALILKIPAIGPILHKGSMARFARTLATTFSAGVPLIDGLESAAGASGNAVYK
KALLKVRQEVMAGMQMNVAMRTTGLFPDMLVQMVMIGEESGGLDDMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGTV
VGGLIVAMYLPIFQMGKVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=374251 FPK91_RS15845 WP_144212248.1 3668202..3669464(-) (pilC) [Shewanella donghaensis strain LT17]
ATGGCAACTGCAACCCGAAGAAGTAAATCAAAACCCAAGAAAGATATAAAACACCAACCAAAAGTGTTTACTTTCGAGTG
GAAGGGAGTCAATCGAGACGGGCAACGTACTTCGGGAGAATTACGTGGCAGCACAATAGCAGAAATTCGCGGTATATTAA
AATCACAAGGCGTGACGCCTAAAGGGGTGAGAAAAAAATCAGCATCGTTATTTAAATCTGAGAAAAGAATTACTGCAATG
GACATTGCAATGATAACTCGTCAAATAGCGACAATGCTTTCCGCTGGTGTCCCGCTGGTAACAACGATACAGTTATTAGG
TCGTGGCCACGAAAAGGCCAAAGTACGTGAGTTATTGGGTAATATTTTAACGGAAGTCCAATCTGGTATTCCTTTATCTG
ACGCTTTACGTCCTCACAGATTATATTTTGATGACCTTTACGTTGATCTCGTAGCAGCGGGCGAGCATTCAGGCTCTTTA
GATGCTGTATTTGACCGAATTGCGACATATCGTGAAAAATCAGAAGCTCTGAAATCGAAAATTAAAAAAGCCATGTTTTA
TCCTGCTGCTGTAGTTATTGTTGCGATCGCAGTTACCGTTTTATTACTACTATTCGTTGTGCCGCAGTTTGAAGAAATAT
TTGCTGGTTTTGGCGCTGAATTACCTGCATTTACACAATTTGTATTGGAAATTTCACGTGCACTTCAATCGTCCTGGTAT
ATTATTGCAGCGATTCTGTTTGCAATGGTATTTACTTTTGTAAGAGCCCACAGAAACTCTCAAGCGGTAAGAGACGCAGT
AGATGCTCTTATATTAAAGATTCCAGCTATAGGGCCAATTTTACACAAGGGTTCGATGGCAAGATTTGCTCGAACTCTAG
CAACAACCTTTTCTGCAGGAGTGCCATTAATTGACGGGTTAGAATCTGCCGCTGGAGCATCAGGAAATGCAGTTTACAAA
AAAGCATTGTTAAAGGTTAGGCAAGAAGTCATGGCGGGAATGCAAATGAATGTAGCCATGCGCACCACCGGATTATTTCC
TGACATGCTAGTTCAAATGGTGATGATTGGGGAAGAGTCTGGAGGATTAGATGACATGCTTAATAAAGTCGCTAACATTT
ATGAAATGCAGGTTGATGATGCTGTAGATGGATTATCAAGCTTAATAGAACCGATAATGATGGTTGTCATTGGCACCGTT
GTCGGAGGACTGATTGTCGCTATGTATTTGCCTATTTTCCAAATGGGTAAAGTAGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(86-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.43

94.048

0.512
  pilC Acinetobacter baumannii D1279779

49.246

94.762

0.467
  pilC Legionella pneumophila strain ERS1305867

48.02

96.19

0.462
  pilC Vibrio cholerae strain A1552

48.5

95.238

0.462
  pilC Acinetobacter baylyi ADP1

48.866

94.524

0.462
  pilC Vibrio campbellii strain DS40M4

45.522

95.714

0.436
  pilG Neisseria meningitidis 44/76-A

42.786

95.714

0.41
  pilG Neisseria gonorrhoeae MS11

42.786

95.714

0.41

Multiple sequence alignment