Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FPK91_RS15840 Genome accession   NZ_CP041783
Coordinates   3667249..3668163 (-) Length   304 a.a.
NCBI ID   WP_144212246.1    Uniprot ID   -
Organism   Shewanella donghaensis strain LT17     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3662249..3673163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPK91_RS15820 mutT 3665187..3665579 (-) 393 WP_144212238.1 8-oxo-dGTP diphosphatase MutT -
  FPK91_RS15825 yacG 3665606..3665815 (-) 210 WP_144212240.1 DNA gyrase inhibitor YacG -
  FPK91_RS15830 zapD 3665856..3666593 (-) 738 WP_144212242.1 cell division protein ZapD -
  FPK91_RS15835 coaE 3666599..3667204 (-) 606 WP_144212244.1 dephospho-CoA kinase -
  FPK91_RS15840 pilD 3667249..3668163 (-) 915 WP_144212246.1 A24 family peptidase Machinery gene
  FPK91_RS15845 pilC 3668202..3669464 (-) 1263 WP_144212248.1 type II secretion system F family protein Machinery gene
  FPK91_RS15850 pilB 3669520..3671232 (-) 1713 WP_144212250.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FPK91_RS15855 - 3671353..3671772 (-) 420 WP_144212252.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34214.71 Da        Isoelectric Point: 8.3203

>NTDB_id=374250 FPK91_RS15840 WP_144212246.1 3667249..3668163(-) (pilD) [Shewanella donghaensis strain LT17]
MTEFISTMSQYPWLFMLISFIFAATIGSFLNVVIHRFPVMMKREWQSECNFYLSEYHPDIVKEVGEKRLNKPIDHYPEKY
NLVVPNSACPKCKTNIKAWHNLPVLGWLLLKGKCASCKTAISPRYPIIEFITGALIATLAWHFGPTWQFLFSSILTFVLV
ALTGIDLDEMLLPDQLTLPILWLGLIINLNGVFASPTDSLIGAAAGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAVFGAW
LGWQFLPLIILLSSLVGAFVGITLIIFKRLAKGNPIPFGPYIALAGWIALIWGQDIINWYLGTL

Nucleotide


Download         Length: 915 bp        

>NTDB_id=374250 FPK91_RS15840 WP_144212246.1 3667249..3668163(-) (pilD) [Shewanella donghaensis strain LT17]
ATGACAGAATTTATATCTACTATGAGCCAATACCCTTGGCTCTTTATGCTAATCAGTTTTATCTTTGCTGCCACCATTGG
CAGTTTTTTAAATGTGGTGATTCATCGTTTTCCAGTAATGATGAAACGTGAATGGCAAAGTGAATGCAATTTTTACTTAA
GTGAATATCACCCAGATATTGTCAAAGAAGTGGGTGAAAAACGTTTAAATAAACCTATTGATCACTACCCTGAAAAATAC
AATCTAGTCGTACCCAATTCTGCTTGCCCGAAATGTAAAACCAACATTAAAGCTTGGCATAACCTCCCTGTATTAGGTTG
GCTACTCTTAAAAGGAAAATGTGCTAGCTGCAAAACAGCTATTAGTCCGCGCTACCCTATCATTGAATTCATTACAGGAG
CCTTGATTGCTACATTAGCATGGCATTTCGGCCCTACCTGGCAGTTTTTGTTCAGCTCAATATTAACCTTTGTCTTAGTT
GCCTTAACGGGAATTGATTTAGATGAAATGCTCCTGCCTGATCAACTAACTTTGCCAATTCTATGGTTAGGATTAATCAT
TAATCTAAATGGTGTATTTGCTAGCCCTACAGACTCACTAATTGGTGCTGCTGCAGGTTATTTGAGCCTATGGTCAGTAT
TTTGGTTATTCAAATTAGTCACAGGCAAAGAAGGCATGGGTTATGGTGACTTCAAATTACTAGCGGTCTTTGGAGCCTGG
TTAGGCTGGCAATTCTTACCACTAATTATTTTACTATCATCGTTAGTTGGAGCCTTTGTAGGTATAACTTTAATCATTTT
CAAAAGACTTGCTAAAGGCAACCCTATCCCTTTTGGTCCCTACATAGCGCTCGCAGGTTGGATTGCTTTAATATGGGGAC
AAGATATTATCAATTGGTATTTAGGGACTTTGTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(154-262)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

49.502

99.013

0.49
  pilD Vibrio cholerae strain A1552

49.153

97.039

0.477
  pilD Acinetobacter baumannii D1279779

50.181

91.118

0.457
  pilD Acinetobacter nosocomialis M2

50.181

91.118

0.457
  pilD Neisseria gonorrhoeae MS11

46.071

92.105

0.424

Multiple sequence alignment