Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FO446_RS16890 Genome accession   NZ_CP041767
Coordinates   3560178..3561422 (-) Length   414 a.a.
NCBI ID   WP_221869145.1    Uniprot ID   -
Organism   Brevibacillus brevis strain B011     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3555178..3566422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO446_RS16875 (FO446_16940) - 3556644..3557285 (-) 642 WP_173607962.1 RecX family transcriptional regulator -
  FO446_RS16880 (FO446_16945) recA 3557353..3558411 (-) 1059 WP_048033393.1 recombinase RecA Machinery gene
  FO446_RS16885 (FO446_16950) - 3558580..3560169 (-) 1590 WP_016743381.1 DEAD/DEAH box helicase -
  FO446_RS16890 (FO446_16955) cinA 3560178..3561422 (-) 1245 WP_221869145.1 competence/damage-inducible protein A Machinery gene
  FO446_RS16895 (FO446_16960) pgsA 3561530..3562105 (-) 576 WP_173607964.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FO446_RS16900 (FO446_16965) rimO 3562106..3563452 (-) 1347 WP_173607965.1 30S ribosomal protein S12 methylthiotransferase RimO -
  FO446_RS16905 (FO446_16970) - 3563564..3564460 (-) 897 WP_173607966.1 helix-turn-helix domain-containing protein -
  FO446_RS16910 (FO446_16975) - 3564473..3565252 (-) 780 WP_173607967.1 YmfK family protein -
  FO446_RS16915 (FO446_16980) - 3565361..3565630 (-) 270 WP_048033399.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44887.47 Da        Isoelectric Point: 5.3155

>NTDB_id=373968 FO446_RS16890 WP_221869145.1 3560178..3561422(-) (cinA) [Brevibacillus brevis strain B011]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNTERLLQVIRLASGRSDLVIFTGGLGPTQDDLTKET
LAGHVGIGLETNSEAMERIEKFFSQRGIVMTENNRKQALVLSGSHVFSNDFGMAPGMAIRHDSSTFVLLPGPPSEMYPMV
ENYVMPYLTDLLPEKQVFHSHVLRFYGIGESALEEKLLDLIEKQDNPTIAPYAKEFEVTLRITARAATVEEGEALILPVE
KEILSRVGQYMYGMGENSSLHDVLVAELKKRNETIACAESCTGGAIASLITSVPGSSHVFRGGVVCYTNEVKNQLLEVPD
SILQTDGAVSEKTAQLLAEHVREKLGATYGISVTGVAGPDPSEGKPVGLVYVGIAAEGIPTVVKELRLAGRRHAIVGRAA
KYALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=373968 FO446_RS16890 WP_221869145.1 3560178..3561422(-) (cinA) [Brevibacillus brevis strain B011]
ATGAGAGCGGAGATTATCGCGGTAGGTACCGAGCTTTTGTTAGGCCAAATCGCTAACACCAACGCACAGTTTCTTTCTCA
GAAGCTGGCGGAAATTGGCGTGGGAGTATACTTTCATACGGTTGTGGGAGACAACACGGAGCGATTGCTACAAGTGATTC
GATTGGCATCAGGACGATCTGATCTCGTCATTTTCACGGGTGGGCTAGGGCCGACTCAAGATGATTTGACAAAAGAGACC
TTGGCGGGGCATGTAGGCATTGGATTGGAAACGAATTCAGAGGCCATGGAGAGAATTGAAAAATTCTTTTCGCAACGTGG
GATTGTCATGACGGAGAACAATCGTAAGCAGGCGCTGGTGCTTTCTGGCAGCCATGTATTCTCCAACGATTTCGGGATGG
CGCCGGGGATGGCGATCCGTCATGACAGTAGTACGTTCGTGCTGTTGCCGGGACCACCAAGTGAGATGTATCCAATGGTG
GAGAATTACGTGATGCCTTACTTGACTGATTTGCTCCCCGAAAAACAAGTGTTTCACTCTCATGTACTCCGCTTCTACGG
GATAGGCGAATCCGCTTTGGAGGAAAAACTGCTCGATTTGATCGAAAAGCAGGACAATCCAACGATCGCGCCTTACGCCA
AAGAATTCGAAGTAACGCTGCGGATTACGGCAAGAGCTGCTACAGTCGAAGAAGGGGAAGCCCTGATTTTGCCTGTAGAA
AAAGAAATTCTCAGCCGTGTTGGCCAGTATATGTACGGGATGGGCGAGAACTCGTCGCTGCATGATGTGCTGGTTGCTGA
GCTGAAAAAAAGAAATGAGACGATTGCTTGTGCAGAAAGCTGCACAGGAGGAGCGATTGCCTCGTTGATTACCTCTGTAC
CGGGAAGCTCGCATGTGTTTCGTGGCGGGGTTGTCTGCTACACCAATGAAGTGAAAAACCAGCTACTCGAAGTACCTGAT
TCCATTTTGCAAACAGATGGGGCAGTCAGTGAGAAAACAGCTCAATTGCTGGCTGAGCATGTACGAGAAAAGCTGGGAGC
TACTTACGGGATTTCTGTCACGGGAGTAGCTGGCCCCGATCCATCCGAGGGCAAGCCTGTTGGCCTTGTTTACGTAGGGA
TCGCGGCAGAAGGAATACCCACAGTTGTAAAAGAGCTGCGCCTTGCCGGAAGAAGGCATGCAATTGTTGGGCGTGCCGCT
AAATACGCGTTGTTTTATGCGCTGCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.816

99.758

0.517
  cinA Streptococcus mitis SK321

48.515

97.585

0.473
  cinA Streptococcus mitis NCTC 12261

48.267

97.585

0.471
  cinA Streptococcus pneumoniae TIGR4

48.02

97.585

0.469
  cinA Streptococcus pneumoniae Rx1

47.772

97.585

0.466
  cinA Streptococcus pneumoniae R6

47.772

97.585

0.466
  cinA Streptococcus pneumoniae D39

47.525

97.585

0.464
  cinA Streptococcus mutans UA159

45.865

96.377

0.442
  cinA Streptococcus suis isolate S10

41.117

95.169

0.391

Multiple sequence alignment