Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FO446_RS16880 Genome accession   NZ_CP041767
Coordinates   3557353..3558411 (-) Length   352 a.a.
NCBI ID   WP_048033393.1    Uniprot ID   -
Organism   Brevibacillus brevis strain B011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3552353..3563411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO446_RS16855 (FO446_16920) - 3552498..3553436 (-) 939 WP_237898577.1 dipeptidase -
  FO446_RS16860 (FO446_16925) spoVS 3553546..3553806 (-) 261 WP_003385776.1 stage V sporulation protein SpoVS -
  FO446_RS16865 (FO446_16930) - 3553925..3554719 (-) 795 WP_173607960.1 TIGR00282 family metallophosphoesterase -
  FO446_RS16870 (FO446_16935) rny 3554829..3556370 (-) 1542 WP_173607961.1 ribonuclease Y -
  FO446_RS16875 (FO446_16940) - 3556644..3557285 (-) 642 WP_173607962.1 RecX family transcriptional regulator -
  FO446_RS16880 (FO446_16945) recA 3557353..3558411 (-) 1059 WP_048033393.1 recombinase RecA Machinery gene
  FO446_RS16885 (FO446_16950) - 3558580..3560169 (-) 1590 WP_016743381.1 DEAD/DEAH box helicase -
  FO446_RS16890 (FO446_16955) cinA 3560178..3561422 (-) 1245 WP_221869145.1 competence/damage-inducible protein A Machinery gene
  FO446_RS16895 (FO446_16960) pgsA 3561530..3562105 (-) 576 WP_173607964.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37920.12 Da        Isoelectric Point: 4.9093

>NTDB_id=373967 FO446_RS16880 WP_048033393.1 3557353..3558411(-) (recA) [Brevibacillus brevis strain B011]
MSDRRAALESALRQIEKQFGKGSIMKLGEVSNVQISTVSSGALALDIALGVGGFPRGRIIEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDILGSKT
KIKVVKNKVAPPFKVAEVDIMYGEGISREGSILDIGSEIDVVQKSGAWYSFNEERLGQGRENSKVFLKENPHIASQIETK
VREYFSLNPGSVPEVEAEHDPEQDEEPTFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=373967 FO446_RS16880 WP_048033393.1 3557353..3558411(-) (recA) [Brevibacillus brevis strain B011]
TTGTCAGATCGTCGCGCAGCTTTGGAGAGTGCATTGCGTCAGATAGAAAAGCAATTCGGAAAAGGTTCCATTATGAAGTT
GGGGGAAGTATCCAACGTTCAGATTTCTACTGTATCGAGCGGAGCGCTTGCTCTTGATATCGCACTTGGTGTGGGCGGAT
TCCCACGTGGACGGATTATTGAGATTTACGGACCAGAGTCTTCTGGTAAAACAACAGTAGCACTTCATGCAATCGCAGAA
GTACAAAGACAAGGCGGACAGGCTGCGTTTATCGATGCTGAGCATGCCCTGGATCCGGTTTACGCTGCAAAGCTGGGTGT
GAACATCGACGAATTGCTCTTGTCCCAACCAGACACTGGTGAGCAAGCGTTGGAGATCGCGGAAGCATTGGTGCGTTCGG
GTGCAGTAGATATTATCGTAGTGGACTCCGTTGCGGCACTCGTGCCAAAAGCAGAGATCGAGGGCGAGATGGGAGATTCC
CACGTAGGTTTGCAAGCACGCTTGATGTCCCAAGCACTTCGCAAGCTGTCCGGTGCCATCAACAAGTCCAAAACGATTGC
GATCTTCATCAACCAGCTTCGTGAAAAAGTGGGAGTTATGTTCGGTAACCCGGAAACAACTCCAGGTGGACGCGCTTTGA
AGTTCTACGCGAGTGTTCGTTTGGATGTTCGTAAAGCGGAATCTATCAAAGTCGGCAACGACATTTTGGGTAGCAAGACA
AAGATCAAAGTTGTCAAAAATAAAGTGGCTCCACCATTTAAGGTTGCAGAAGTGGACATCATGTACGGTGAAGGTATTTC
CAGAGAAGGTAGCATTCTCGACATCGGTTCTGAGATTGATGTCGTGCAAAAGAGTGGTGCTTGGTATTCCTTCAACGAAG
AACGTCTCGGCCAAGGTAGAGAAAATTCGAAAGTCTTCCTGAAGGAAAATCCGCACATTGCATCACAGATTGAAACGAAA
GTGCGCGAATACTTCAGCCTGAACCCTGGTTCTGTTCCAGAAGTAGAGGCAGAGCATGACCCAGAGCAAGATGAAGAGCC
TACATTTGATCTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.928

94.318

0.773
  recA Latilactobacillus sakei subsp. sakei 23K

71.988

94.318

0.679
  recA Streptococcus mitis SK321

65.928

100

0.676
  recA Streptococcus mitis NCTC 12261

66.48

100

0.676
  recA Streptococcus pneumoniae Rx1

66.856

100

0.67
  recA Streptococcus pneumoniae D39

66.856

100

0.67
  recA Streptococcus pneumoniae R6

66.856

100

0.67
  recA Streptococcus pneumoniae TIGR4

66.856

100

0.67
  recA Streptococcus mutans UA159

65.254

100

0.656
  recA Streptococcus pyogenes NZ131

70.336

92.898

0.653
  recA Lactococcus lactis subsp. cremoris KW2

68.485

93.75

0.642
  recA Neisseria gonorrhoeae MS11

62.428

98.295

0.614
  recA Neisseria gonorrhoeae MS11

62.428

98.295

0.614
  recA Neisseria gonorrhoeae strain FA1090

62.428

98.295

0.614
  recA Glaesserella parasuis strain SC1401

61.318

99.148

0.608
  recA Vibrio cholerae strain A1552

65.443

92.898

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.443

92.898

0.608
  recA Ralstonia pseudosolanacearum GMI1000

67.619

89.489

0.605
  recA Acinetobacter baylyi ADP1

60.857

99.432

0.605
  recA Acinetobacter baumannii D1279779

60.857

99.432

0.605
  recA Pseudomonas stutzeri DSM 10701

60.35

97.443

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

91.193

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

92.898

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

90.909

0.565
  recA Helicobacter pylori 26695

59.639

94.318

0.563
  recA Helicobacter pylori strain NCTC11637

59.337

94.318

0.56

Multiple sequence alignment