Detailed information NTG0373755

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: FFH21_RS04180
• Genome accession: NZ_CP041754
• Coordinates: 895091..896308 (-)
• Length: 405 a.a.
• NCBI ID: WP_011167727.1
• Uniprot ID: Q48NC0
• Organism: Pseudomonas sp. KBS0707
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 890091..901308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FFH21_RS04165 (FFH21_004165)	yacG	893391..893600 (-)	210	WP_007251656.1	DNA gyrase inhibitor YacG	-
FFH21_RS04170 (FFH21_004170)	coaE	893597..894220 (-)	624	WP_011167725.1	dephospho-CoA kinase	-
FFH21_RS04175 (FFH21_004175)	pilD	894217..895089 (-)	873	WP_011167726.1	A24 family peptidase	Machinery gene
FFH21_RS04180 (FFH21_004180)	pilC	895091..896308 (-)	1218	WP_011167727.1	type II secretion system F family protein	Machinery gene
FFH21_RS04185 (FFH21_004185)	pilB	896311..898005 (-)	1695	WP_011167728.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FFH21_RS04190 (FFH21_004190)	-	898230..898625 (+)	396	WP_011167729.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
FFH21_RS04195 (FFH21_004195)	-	899190..900449 (+)	1260	WP_004663377.1	IS256-like element ISPsy17 family transposase	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44043.98 Da
• Isoelectric Point: 10.0788

>NTDB_id=373755 FFH21_RS04180 WP_011167727.1 895091..896308(-) (pilC) [Pseudomonas sp. KBS0707]
MASKAVKVSVYTWEGVDKKGGKLSGEVSGHNLALVKAQLRKQGINFTKVRKKPVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIIAEGAENPNMRALVGSLKQEVSAGNSFATALRQKPEYFDDLFCNLVDAGEQAGALESLLDRIASYKEKT
EKLKAKIKKAMTYPIAVLIVAIIVSGILLIKVVPQFQSVFAGFGAELPAFTLMVIGLSDIVQKWWLAIVGLFFVGAFLFK
RAYKQSEKFRDNIDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRDAVNKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDNMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGLVIAMYLPIFK
LGNVV

Nucleotide

• Length: 1218 bp

>NTDB_id=373755 FFH21_RS04180 WP_011167727.1 895091..896308(-) (pilC) [Pseudomonas sp. KBS0707]
ATGGCCAGCAAGGCAGTTAAAGTCAGTGTTTACACATGGGAAGGTGTGGACAAGAAAGGCGGCAAACTCAGTGGCGAAGT
GAGCGGGCACAATCTTGCGCTCGTAAAGGCTCAACTGCGCAAGCAAGGTATCAACTTCACCAAGGTACGTAAAAAGCCTG
TTTCGATATTTGGCAAAGGCAAGAAGATCAAGCCGCTGGACATCGCATTCTTTTCTCGGCAGATGGCGACCATGATGAAG
GCAGGCGTGCCGCTTCTGCAGTCATTTGACATCATTGCCGAGGGTGCGGAAAACCCGAACATGCGTGCACTGGTTGGCTC
ACTGAAGCAGGAGGTGTCGGCAGGGAACAGCTTTGCGACGGCTCTGCGACAGAAACCGGAATACTTCGATGACCTGTTTT
GTAATTTGGTCGATGCGGGCGAGCAAGCAGGTGCACTCGAGAGTCTCTTGGACCGCATCGCTAGCTACAAGGAAAAGACT
GAAAAGCTCAAAGCAAAAATCAAAAAAGCCATGACATACCCTATTGCTGTGTTGATCGTCGCAATTATCGTGTCAGGTAT
TTTGCTCATCAAAGTGGTGCCGCAGTTTCAGTCAGTTTTCGCAGGCTTTGGCGCAGAGCTACCCGCATTTACTCTCATGG
TAATCGGCTTATCAGATATCGTACAGAAATGGTGGTTAGCAATAGTTGGTCTTTTTTTCGTAGGCGCTTTTTTGTTCAAA
CGAGCTTATAAGCAGTCTGAAAAATTTCGCGATAATATTGATCGGTTTCTGCTGAAAGTACCGATCATTGGACCGCTTAT
TTTCAAGTCTTCCGTAGCTCGCTACGCGCGGACACTTGCAACAACATTCGCAGCAGGCGTTCCTCTAGTGGAGGCACTTG
ACTCAGTTGCAGGTGCTACCGGCAATGTTGTTTTCAGAGACGCTGTAAACAAGGTCAAACAAGACGTTTCCACAGGCATG
CAGTTGAATTTTTCGATGCGATCGACCGGTGTTTTTCCAAGCTTGGCAATCCAGATGACGGCCATAGGCGAGGAATCAGG
CGCGTTGGACAATATGCTGGACAAGGTAGCGACCTACTACGAGGATGAGGTCGACAATATGGTCGACAACTTAACCAGCC
TGATGGAGCCCATGATCATGGCTGTGCTGGGTGTCATCGTCGGCGGCCTTGTTATCGCCATGTACCTCCCCATTTTCAAA
CTCGGAAACGTCGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

3D structure

• AlphaFold DB: Q48NC0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	74.568	100	0.746
pilC	Acinetobacter baylyi ADP1	59.512	100	0.602
pilC	Acinetobacter baumannii D1279779	58.911	99.753	0.588
pilC	Legionella pneumophila strain ERS1305867	52.778	97.778	0.516
pilG	Neisseria gonorrhoeae MS11	43.672	99.506	0.435
pilG	Neisseria meningitidis 44/76-A	43.672	99.506	0.435
pilC	Vibrio campbellii strain DS40M4	42.015	100	0.422
pilC	Vibrio cholerae strain A1552	41.728	100	0.417
pilC	Thermus thermophilus HB27	38.557	99.259	0.383