Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FOA15_RS16020 Genome accession   NZ_CP041731
Coordinates   3529507..3530778 (+) Length   423 a.a.
NCBI ID   WP_094155426.1    Uniprot ID   A0A222WN21
Organism   Paenibacillus kribbensis strain PS04     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3524507..3535778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOA15_RS15990 - 3525331..3525585 (+) 255 WP_007430092.1 DUF3243 domain-containing protein -
  FOA15_RS15995 - 3525838..3526599 (+) 762 WP_043890955.1 DUF3388 domain-containing protein -
  FOA15_RS16000 - 3526630..3527727 (+) 1098 WP_094155427.1 RodZ family helix-turn-helix domain-containing protein -
  FOA15_RS16005 - 3527811..3527975 (+) 165 WP_007430095.1 hypothetical protein -
  FOA15_RS16010 - 3528122..3528613 (+) 492 WP_007430096.1 YajQ family cyclic di-GMP-binding protein -
  FOA15_RS16015 pgsA 3528823..3529410 (+) 588 WP_025719900.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOA15_RS16020 cinA 3529507..3530778 (+) 1272 WP_094155426.1 competence/damage-inducible protein A Machinery gene
  FOA15_RS16025 recA 3531017..3532078 (+) 1062 WP_007430099.1 recombinase RecA Machinery gene
  FOA15_RS16030 - 3532300..3533043 (+) 744 WP_370629396.1 regulatory protein RecX -
  FOA15_RS16035 rny 3533418..3534962 (+) 1545 WP_007430102.1 ribonuclease Y -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46398.45 Da        Isoelectric Point: 4.8878

>NTDB_id=373628 FOA15_RS16020 WP_094155426.1 3529507..3530778(+) (cinA) [Paenibacillus kribbensis strain PS04]
MKAEIIAVGTELLLGQIVNTNAQYLSQELAAIGIDVYFQTVVGDNMDRLQEAVRLAQKRADIILFSGGLGPTQDDLTKDA
IAAVLGRKLHIDRLAMDKLEQFFRNRGVVMTENNRRQALSIEGATPLENETGLAIGDAIAQDGKFYVVLPGPPKELKPMF
ENQAKPWLLQQALSGKEMPIYSKMLKFAGIGESALETRLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEAEIQQRLSEHMYASEDVTLEKVIVDLMSKRGLTVSAAESCTGGMLMEHITAVPGSSVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARIVMDSDFGLSVTGVAGPGFSERKPVGLVYIGIAERDKETEVYELNLSGNREAIR
LRSVKAILYRLWRRLMENEKLSS

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=373628 FOA15_RS16020 WP_094155426.1 3529507..3530778(+) (cinA) [Paenibacillus kribbensis strain PS04]
ATGAAGGCTGAAATCATCGCAGTAGGAACAGAATTATTGCTTGGACAAATCGTGAATACAAATGCTCAATATTTGTCACA
AGAGTTGGCCGCAATCGGAATTGATGTATATTTTCAGACCGTAGTTGGCGATAACATGGATCGGCTTCAGGAAGCGGTAC
GACTGGCTCAGAAGCGTGCAGATATTATTTTGTTTTCCGGTGGTCTAGGACCAACTCAGGATGATTTGACGAAAGATGCG
ATAGCTGCTGTACTGGGGCGGAAATTGCATATAGATCGTCTTGCCATGGACAAGCTCGAACAGTTTTTCCGCAACCGTGG
GGTAGTAATGACCGAGAATAACCGCCGTCAGGCGCTGTCTATTGAAGGGGCTACCCCGCTTGAAAACGAGACAGGATTGG
CTATAGGGGACGCCATTGCACAGGATGGAAAATTTTATGTGGTTTTACCTGGTCCTCCTAAGGAACTTAAACCGATGTTT
GAAAATCAAGCGAAGCCTTGGCTGCTTCAGCAGGCATTGAGCGGTAAGGAAATGCCGATTTATTCGAAAATGCTAAAATT
TGCAGGGATTGGTGAGTCCGCGCTGGAAACCCGGCTTCTAGATCTGATTCAGTCTCAGACGGACCCGACTATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGCATATCCACCAAGGCTGCGAGTGAAAGTGAAGCGTTAATCAAGCTGACGGCT
ACCGAAGCAGAAATTCAACAACGTCTTTCCGAACATATGTATGCAAGCGAGGATGTTACGCTGGAGAAGGTCATCGTGGA
TCTAATGTCCAAGCGGGGGCTAACGGTTAGTGCTGCGGAAAGCTGCACAGGCGGGATGCTGATGGAACACATTACTGCCG
TACCGGGGAGCTCTGTTATGTTTCAAGGTGGCATCGTGTGTTATTCCAATGAAATGAAGATGAAGCTGCTTAACGTTCCT
TATGATTATTTGGAAGGGGATCATGCGCCCGGCGCAGTGAGTAAGGAAGTGGCCCTTGTGCTTGCAGAGCAGGCAAGAAT
AGTCATGGACAGCGATTTCGGACTTTCAGTTACAGGTGTGGCCGGACCTGGATTTTCCGAACGCAAGCCTGTAGGCCTGG
TATACATCGGTATCGCTGAACGCGACAAGGAAACGGAAGTATATGAGCTGAATCTGAGTGGAAACCGTGAAGCAATCCGC
CTGCGATCTGTCAAAGCAATCCTATACAGATTGTGGCGCAGATTGATGGAGAACGAGAAGCTCTCTTCATGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A222WN21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.123

96.217

0.482
  cinA Streptococcus mitis NCTC 12261

49.877

96.217

0.48
  cinA Streptococcus pneumoniae TIGR4

49.877

96.217

0.48
  cinA Streptococcus pneumoniae Rx1

49.631

96.217

0.478
  cinA Streptococcus pneumoniae R6

49.631

96.217

0.478
  cinA Streptococcus pneumoniae D39

49.386

96.217

0.475
  cinA Bacillus subtilis subsp. subtilis str. 168

48.762

95.508

0.466
  cinA Streptococcus mutans UA159

44.941

100

0.452
  cinA Streptococcus suis isolate S10

44.125

90.544

0.4

Multiple sequence alignment