Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FOA15_RS16025 Genome accession   NZ_CP041731
Coordinates   3531017..3532078 (+) Length   353 a.a.
NCBI ID   WP_007430099.1    Uniprot ID   A0A222WP46
Organism   Paenibacillus kribbensis strain PS04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3526017..3537078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOA15_RS16000 - 3526630..3527727 (+) 1098 WP_094155427.1 RodZ family helix-turn-helix domain-containing protein -
  FOA15_RS16005 - 3527811..3527975 (+) 165 WP_007430095.1 hypothetical protein -
  FOA15_RS16010 - 3528122..3528613 (+) 492 WP_007430096.1 YajQ family cyclic di-GMP-binding protein -
  FOA15_RS16015 pgsA 3528823..3529410 (+) 588 WP_025719900.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOA15_RS16020 cinA 3529507..3530778 (+) 1272 WP_094155426.1 competence/damage-inducible protein A Machinery gene
  FOA15_RS16025 recA 3531017..3532078 (+) 1062 WP_007430099.1 recombinase RecA Machinery gene
  FOA15_RS16030 - 3532300..3533043 (+) 744 WP_370629396.1 regulatory protein RecX -
  FOA15_RS16035 rny 3533418..3534962 (+) 1545 WP_007430102.1 ribonuclease Y -
  FOA15_RS16040 - 3535039..3535833 (+) 795 WP_068496286.1 TIGR00282 family metallophosphoesterase -
  FOA15_RS16045 - 3535963..3536223 (+) 261 WP_007430104.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38233.57 Da        Isoelectric Point: 4.9974

>NTDB_id=373629 FOA15_RS16025 WP_007430099.1 3531017..3532078(+) (recA) [Paenibacillus kribbensis strain PS04]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMQVETIPSGSIALDIALGTGGFPRGRIIEVYGPESSGKTTVALHAIAE
VQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRVESLKMGNDIVGNRT
RIKVVKNKVAPPFRQAEVDIMYGEGISKEGSLIDIGTEHDIVDKSGAWYSYEGERLGQGRENAKQFLKENPNIASTIEQK
IRLASNLITTVAPPTEEELAQEAKEEQELLELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=373629 FOA15_RS16025 WP_007430099.1 3531017..3532078(+) (recA) [Paenibacillus kribbensis strain PS04]
TTGTCAGATCGTCGTGCTGCGCTGGATATGGCGCTCCGTCAAATAGAAAAGCAATTCGGTAAAGGTTCCATTATGAAGTT
GGGTGAGTCCACTCACATGCAAGTGGAAACGATTCCCAGTGGTTCAATTGCTTTGGATATTGCGTTAGGAACGGGCGGCT
TTCCAAGAGGCCGGATTATTGAAGTATATGGACCGGAATCATCCGGTAAAACGACAGTAGCTCTTCATGCTATCGCAGAG
GTGCAAAAAACAGGCGGACAAGCCGCCTTTATCGATGCCGAGCATGCGCTTGATCCGTCGTATGCGAGCAAGCTGGGCGT
CAATATTGATGAGTTGTTACTATCGCAGCCAGATACAGGAGAGCAGGCACTTGAGATTGCCGAGGCTCTTGTGCGTAGTG
GAGCAGTAGACATTATTGTCATTGACTCTGTAGCGGCACTTGTACCGAAGGCAGAAATTGAAGGCGAAATGGGGGATTCC
CACGTTGGTCTTCAAGCGCGCTTGATGTCGCAGGCATTGCGCAAGCTGTCTGGAGCCATTAATAAATCGAAAACCATTGC
TATCTTTATTAACCAGTTGCGTGAAAAAGTAGGTGTTATGTTCGGCAACCCTGAAACTACACCAGGTGGACGTGCATTGA
AGTTTTACTCAACGGTACGCCTGGATGTTCGCCGTGTTGAAAGCTTGAAAATGGGGAACGACATCGTGGGTAACCGCACA
CGTATTAAAGTCGTGAAAAATAAAGTGGCTCCTCCTTTCCGTCAGGCCGAAGTGGACATTATGTACGGTGAGGGCATTTC
CAAAGAAGGCAGCTTGATCGACATCGGTACGGAGCATGATATTGTCGACAAGAGCGGAGCCTGGTATTCTTACGAAGGTG
AGCGCCTTGGTCAGGGACGCGAGAATGCGAAGCAATTTTTGAAGGAAAATCCGAACATTGCTAGTACAATCGAGCAAAAA
ATTCGGTTGGCCAGTAATTTAATTACGACGGTTGCGCCACCGACAGAAGAAGAGTTGGCGCAGGAAGCCAAGGAAGAACA
GGAATTGCTAGAGCTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A222WP46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.404

91.218

0.779
  recA Latilactobacillus sakei subsp. sakei 23K

71.386

96.034

0.686
  recA Streptococcus mitis NCTC 12261

66.189

98.867

0.654
  recA Streptococcus mutans UA159

65.429

99.15

0.649
  recA Streptococcus mitis SK321

66.185

98.017

0.649
  recA Streptococcus pneumoniae R6

68.278

93.768

0.64
  recA Streptococcus pneumoniae D39

68.278

93.768

0.64
  recA Streptococcus pneumoniae TIGR4

68.278

93.768

0.64
  recA Streptococcus pneumoniae Rx1

68.278

93.768

0.64
  recA Streptococcus pyogenes NZ131

68.308

92.068

0.629
  recA Lactococcus lactis subsp. cremoris KW2

66.465

93.768

0.623
  recA Neisseria gonorrhoeae MS11

64.371

94.618

0.609
  recA Neisseria gonorrhoeae MS11

64.371

94.618

0.609
  recA Neisseria gonorrhoeae strain FA1090

64.371

94.618

0.609
  recA Glaesserella parasuis strain SC1401

61.143

99.15

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.875

90.652

0.606
  recA Vibrio cholerae strain A1552

66.875

90.652

0.606
  recA Acinetobacter baylyi ADP1

60.795

99.717

0.606
  recA Acinetobacter baumannii D1279779

61.207

98.584

0.603
  recA Pseudomonas stutzeri DSM 10701

62.463

96.601

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.732

90.935

0.598
  recA Ralstonia pseudosolanacearum GMI1000

67.532

87.252

0.589
  recA Helicobacter pylori 26695

60.355

95.751

0.578
  recA Helicobacter pylori strain NCTC11637

60.059

95.751

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.963

92.351

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

90.935

0.55

Multiple sequence alignment