Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | FO459_RS03020 | Genome accession | NZ_CP041727 |
| Coordinates | 575740..576054 (+) | Length | 104 a.a. |
| NCBI ID | WP_002459016.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain SL122 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 570740..581054
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FO459_RS02990 (FO459_02985) | - | 571532..571735 (+) | 204 | WP_002459010.1 | YqgQ family protein | - |
| FO459_RS02995 (FO459_02990) | - | 571732..572718 (+) | 987 | WP_002478128.1 | ROK family glucokinase | - |
| FO459_RS03000 (FO459_02995) | - | 572718..573041 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| FO459_RS03005 (FO459_03000) | - | 573045..573668 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| FO459_RS03010 (FO459_03005) | comGA | 573715..574689 (+) | 975 | WP_002478129.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FO459_RS03015 (FO459_03010) | comGB | 574661..575725 (+) | 1065 | WP_002478130.1 | competence type IV pilus assembly protein ComGB | - |
| FO459_RS03020 (FO459_03015) | comGC | 575740..576054 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FO459_RS03025 (FO459_03020) | comGD | 575987..576481 (+) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| FO459_RS03030 (FO459_03025) | - | 576468..576761 (+) | 294 | WP_002478131.1 | hypothetical protein | - |
| FO459_RS13030 (FO459_03030) | - | 576823..577182 (+) | 360 | WP_002478132.1 | competence type IV pilus minor pilin ComGF | - |
| FO459_RS03045 (FO459_03040) | - | 577336..577854 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| FO459_RS03050 (FO459_03045) | gcvT | 578024..579115 (+) | 1092 | WP_002478133.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| FO459_RS03055 (FO459_03050) | gcvPA | 579132..580481 (+) | 1350 | WP_002478134.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11373.37 Da Isoelectric Point: 8.2727
>NTDB_id=373552 FO459_RS03020 WP_002459016.1 575740..576054(+) (comGC) [Staphylococcus lugdunensis strain SL122]
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=373552 FO459_RS03020 WP_002459016.1 575740..576054(+) (comGC) [Staphylococcus lugdunensis strain SL122]
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
82.353 |
98.077 |
0.808 |
| comGC | Staphylococcus aureus N315 |
82.353 |
98.077 |
0.808 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
45.918 |
94.231 |
0.433 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.554 |
97.115 |
0.433 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
46.154 |
87.5 |
0.404 |
| comGC/cglC | Streptococcus pneumoniae R6 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae D39 |
48.235 |
81.731 |
0.394 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
50.633 |
75.962 |
0.385 |
| comGC/cglC | Streptococcus mitis SK321 |
51.282 |
75 |
0.385 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.282 |
75 |
0.385 |
| comYC | Streptococcus mutans UA140 |
48.75 |
76.923 |
0.375 |
| comYC | Streptococcus mutans UA159 |
48.75 |
76.923 |
0.375 |