Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GC56T3_RS11770 Genome accession   NC_014206
Coordinates   2388342..2389586 (-) Length   414 a.a.
NCBI ID   WP_013145706.1    Uniprot ID   -
Organism   Geobacillus sp. C56-T3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2383342..2394586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC56T3_RS11755 (GC56T3_2256) recA 2384338..2385153 (-) 816 WP_021322290.1 recombinase RecA Machinery gene
  GC56T3_RS20000 - 2385226..2386095 (-) 870 WP_227456648.1 HNH endonuclease -
  GC56T3_RS20005 - 2386192..2387040 (-) 849 WP_227456649.1 reverse transcriptase domain-containing protein -
  GC56T3_RS11765 (GC56T3_2258) - 2387877..2388164 (-) 288 Protein_2321 DNA recombination/repair protein RecA -
  GC56T3_RS11770 (GC56T3_2259) cinA 2388342..2389586 (-) 1245 WP_013145706.1 competence/damage-inducible protein A Machinery gene
  GC56T3_RS11775 (GC56T3_2260) pgsA 2389613..2390191 (-) 579 WP_011230793.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GC56T3_RS11780 (GC56T3_2261) - 2390272..2391165 (-) 894 WP_013145707.1 RodZ domain-containing protein -
  GC56T3_RS11785 (GC56T3_2262) - 2391193..2391984 (-) 792 WP_011230791.1 DUF3388 domain-containing protein -
  GC56T3_RS11790 (GC56T3_2263) - 2392116..2392364 (-) 249 WP_011230790.1 DUF3243 domain-containing protein -
  GC56T3_RS11795 (GC56T3_2264) ymfI 2392427..2393170 (-) 744 WP_369769986.1 elongation factor P 5-aminopentanone reductase -
  GC56T3_RS11800 (GC56T3_2265) yfmH 2393198..2394487 (-) 1290 WP_013145709.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44824.64 Da        Isoelectric Point: 6.2634

>NTDB_id=37353 GC56T3_RS11770 WP_013145706.1 2388342..2389586(-) (cinA) [Geobacillus sp. C56-T3]
MNAEIIAVGSELLLGQIANTNAQFLSRQLAMLGINVYFHTVVGDNAGRLEQAVKTAQTRANLIIFTGGLGPTKDDLTKET
IARLLGRRLVIDEEALRAIEVYFARTNRPMTENNKKQALVLEGSTVLKNEHGMAPGMALVADGITYMLLPGPPKEMRPMF
KKYGNAFLRRTFSLSERIESRVLRFFGIGESALETAIADLIDAQSNPTIAPLAGDGEVTLRLTAKHQDEAEAKRLLDEVE
AAILARVGRHCYGYNDETLFTKTLERLKEKGWTIASAESLTGGLFLEQLTAIPGASQVVQGGVVCYTNGVKEQVLGIPRP
LLEAEGAVSEPCARLLAENVRAMCDADIGISFTGVAGPDPLEGHPPGTVYIGIAVRGRDATVHRLTLSGTRDAIRIRTAK
YGCFFLLEMLAADC

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=37353 GC56T3_RS11770 WP_013145706.1 2388342..2389586(-) (cinA) [Geobacillus sp. C56-T3]
TTGAACGCGGAGATCATTGCCGTTGGCTCCGAGCTGTTGCTTGGGCAAATCGCCAATACGAACGCCCAGTTTTTGTCGCG
GCAGCTGGCGATGCTTGGCATTAACGTCTATTTCCATACCGTCGTCGGCGACAACGCCGGCCGCCTCGAACAGGCGGTGA
AAACGGCGCAAACGAGAGCGAACCTCATCATTTTCACCGGCGGCCTCGGCCCGACGAAAGACGATTTAACGAAGGAGACG
ATCGCCCGTTTGCTTGGCCGCCGGCTCGTGATCGACGAGGAAGCGCTCCGAGCGATTGAGGTGTATTTTGCCCGCACAAA
CCGGCCGATGACAGAAAACAATAAAAAGCAGGCGCTCGTCTTGGAAGGATCGACGGTGCTGAAAAACGAGCACGGCATGG
CGCCAGGGATGGCGCTTGTGGCAGACGGCATTACGTACATGCTGCTGCCCGGGCCGCCGAAAGAAATGCGGCCGATGTTC
AAAAAATACGGAAACGCCTTTTTGCGCCGTACGTTTTCGCTTTCCGAGCGCATCGAGTCGCGCGTGCTCCGCTTTTTTGG
CATCGGTGAATCAGCGCTCGAGACGGCGATTGCGGATTTGATCGACGCCCAGTCGAATCCGACGATCGCGCCGCTGGCCG
GCGACGGTGAAGTGACGCTTCGTCTGACAGCGAAGCATCAGGATGAGGCGGAGGCGAAGCGGCTTCTTGACGAAGTGGAA
GCGGCCATTTTGGCGCGCGTCGGCCGCCACTGCTACGGATATAACGATGAAACGTTGTTTACAAAGACGCTCGAGCGGTT
AAAAGAAAAAGGATGGACGATCGCGTCGGCCGAAAGTTTGACCGGCGGCCTTTTCCTCGAACAGCTCACCGCCATCCCCG
GCGCGTCGCAAGTCGTGCAGGGCGGTGTCGTCTGCTACACAAACGGCGTCAAAGAACAGGTGCTTGGCATACCGCGCCCG
CTGCTTGAGGCAGAAGGGGCGGTGAGCGAGCCGTGCGCCCGTTTGCTTGCTGAAAACGTCCGCGCGATGTGCGATGCGGA
TATCGGCATCAGCTTCACCGGCGTCGCCGGACCCGATCCGCTTGAGGGCCACCCGCCCGGCACCGTGTATATCGGCATCG
CCGTCCGCGGGCGCGATGCGACTGTCCACCGTCTGACGCTGTCCGGCACGCGTGATGCCATTCGCATCCGCACCGCCAAA
TACGGCTGTTTTTTTCTGCTTGAGATGCTCGCGGCCGACTGCTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.294

98.551

0.594
  cinA Streptococcus mitis SK321

50.914

92.512

0.471
  cinA Streptococcus mitis NCTC 12261

50.914

92.512

0.471
  cinA Streptococcus pneumoniae TIGR4

50.392

92.512

0.466
  cinA Streptococcus pneumoniae Rx1

50.392

92.512

0.466
  cinA Streptococcus pneumoniae R6

50.392

92.512

0.466
  cinA Streptococcus pneumoniae D39

50.131

92.512

0.464
  cinA Streptococcus mutans UA159

48.12

96.377

0.464
  cinA Streptococcus suis isolate S10

42.857

91.304

0.391

Multiple sequence alignment