Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FOG18_RS08200 Genome accession   NZ_CP041668
Coordinates   1816861..1818081 (-) Length   406 a.a.
NCBI ID   WP_143867706.1    Uniprot ID   -
Organism   Legionella israelensis strain L18-01051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1811861..1823081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOG18_RS08175 (FOG18_08175) - 1811929..1813374 (+) 1446 WP_143867698.1 bifunctional 2-methylcitrate dehydratase/aconitate hydratase -
  FOG18_RS08180 (FOG18_08180) - 1813582..1814397 (-) 816 WP_143867700.1 pyruvate, water dikinase regulatory protein -
  FOG18_RS08185 (FOG18_08185) - 1814763..1815170 (+) 408 WP_143867702.1 hypothetical protein -
  FOG18_RS08190 (FOG18_08190) - 1815182..1815772 (+) 591 WP_058502285.1 hypothetical protein -
  FOG18_RS08195 (FOG18_08195) - 1815997..1816857 (-) 861 WP_143867704.1 A24 family peptidase -
  FOG18_RS08200 (FOG18_08200) pilC 1816861..1818081 (-) 1221 WP_143867706.1 type II secretion system F family protein Machinery gene
  FOG18_RS08205 (FOG18_08205) pilB 1818087..1819808 (-) 1722 WP_143867707.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FOG18_RS08210 (FOG18_08210) - 1819977..1820756 (+) 780 WP_185967261.1 methyltransferase domain-containing protein -
  FOG18_RS08215 (FOG18_08215) - 1820882..1821208 (+) 327 WP_058502289.1 DUF1820 family protein -
  FOG18_RS08220 (FOG18_08220) - 1821331..1821906 (+) 576 WP_058502290.1 hypoxanthine-guanine phosphoribosyltransferase -
  FOG18_RS08225 (FOG18_08225) - 1821928..1823064 (-) 1137 WP_143867711.1 HlyD family type I secretion periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44603.52 Da        Isoelectric Point: 9.6840

>NTDB_id=372937 FOG18_RS08200 WP_143867706.1 1816861..1818081(-) (pilC) [Legionella israelensis strain L18-01051]
MPKNANPMITFQYEGINRSGEKTKGEIEARSMAIAKADLRRQGIITKKVIKKRKSLFDRANKKITQADITVFSRQLATMI
EAGIPLVQSFDIVAKGQSNKRVQDLINTIKNDVETGLTLAESLAKHPAYFNDLFCNLVDAGEKSGSLEVMLNKVATYKEK
IESIKKKIKKALTYPIAVMVIAFLVTAGLLIFVVPQFESLFQGFGADLPAMTRMVIRLSETFQAYWYIIFGVLALAVYAF
IYAKNHSPNFAQGVDRVMLKFPVIGPILEKAAIARFSRTLSITFAAGLPLVDALKSVAGATGNILFAKATDKIREEVSTG
QQMQLAMENTHMFPNMVVQMVAIGEESGALEQMLSKVADFYEEEVDNAVDSLSSLLEPLIMAILGILVGGLVVAMYLPIF
KLGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=372937 FOG18_RS08200 WP_143867706.1 1816861..1818081(-) (pilC) [Legionella israelensis strain L18-01051]
ATGCCTAAAAATGCGAATCCAATGATTACCTTTCAATATGAAGGCATCAATCGTTCAGGAGAAAAAACAAAAGGTGAAAT
AGAGGCCAGAAGTATGGCTATTGCCAAAGCGGATCTTCGCCGACAAGGAATTATTACCAAAAAAGTCATCAAGAAAAGAA
AATCTCTTTTTGACAGAGCCAATAAAAAAATTACTCAGGCTGATATTACCGTTTTCAGTCGGCAGTTGGCCACCATGATA
GAAGCCGGTATTCCTTTGGTACAATCATTTGATATTGTGGCAAAAGGTCAAAGCAATAAGCGCGTTCAGGATTTAATTAA
TACCATAAAAAATGATGTTGAAACAGGACTTACACTTGCTGAATCATTGGCGAAACATCCGGCTTATTTTAATGATTTAT
TTTGCAACCTGGTCGATGCCGGAGAAAAATCAGGTTCACTGGAGGTCATGTTAAATAAAGTCGCAACTTATAAGGAAAAA
ATAGAATCCATTAAAAAGAAAATTAAAAAAGCGCTGACTTATCCTATAGCCGTTATGGTGATAGCCTTTCTTGTGACTGC
AGGTTTGTTGATTTTTGTCGTTCCTCAGTTTGAGTCTTTATTTCAAGGTTTTGGAGCTGATTTACCGGCCATGACCCGGA
TGGTCATTCGCTTATCTGAGACATTCCAGGCTTATTGGTATATTATTTTCGGTGTTTTAGCACTTGCTGTTTATGCTTTT
ATCTACGCTAAAAATCATTCTCCTAATTTTGCTCAGGGGGTAGATCGCGTCATGCTTAAGTTTCCTGTTATAGGTCCTAT
TCTTGAAAAAGCAGCCATTGCTCGATTTTCACGTACGCTATCCATCACTTTTGCAGCCGGTTTGCCTTTGGTTGATGCTT
TAAAATCAGTTGCCGGAGCCACAGGTAATATTCTTTTTGCCAAGGCGACTGATAAAATCAGAGAAGAAGTCTCGACCGGC
CAACAAATGCAACTCGCCATGGAAAATACTCATATGTTTCCCAATATGGTAGTACAAATGGTAGCGATTGGTGAGGAGTC
GGGCGCTTTGGAGCAAATGCTGTCCAAGGTAGCTGATTTTTATGAAGAAGAAGTGGATAATGCCGTTGATTCATTAAGCA
GTTTACTTGAACCTCTTATTATGGCTATATTAGGCATTCTGGTTGGTGGGCTGGTTGTGGCCATGTATTTACCTATCTTC
AAACTTGGATCAGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

82.759

100

0.828
  pilC Pseudomonas stutzeri DSM 10701

58.838

97.537

0.574
  pilC Acinetobacter baumannii D1279779

55.556

99.754

0.554
  pilC Acinetobacter baylyi ADP1

55.062

99.754

0.549
  pilG Neisseria meningitidis 44/76-A

44.836

97.783

0.438
  pilG Neisseria gonorrhoeae MS11

44.584

97.783

0.436
  pilC Vibrio cholerae strain A1552

43

98.522

0.424
  pilC Vibrio campbellii strain DS40M4

40.554

97.783

0.397
  pilC Thermus thermophilus HB27

36.725

99.261

0.365

Multiple sequence alignment