Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FM037_RS01705 Genome accession   NZ_CP041614
Coordinates   384461..385732 (-) Length   423 a.a.
NCBI ID   WP_144044571.1    Uniprot ID   -
Organism   Shewanella psychropiezotolerans strain YLB-06     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 379461..390732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FM037_RS01675 (FM037_01675) - 379855..380859 (-) 1005 WP_144044565.1 ABC transporter substrate-binding protein -
  FM037_RS01680 (FM037_01680) mutT 381347..381757 (-) 411 WP_144044566.1 8-oxo-dGTP diphosphatase MutT -
  FM037_RS01685 (FM037_01685) yacG 381763..381975 (-) 213 WP_144044567.1 DNA gyrase inhibitor YacG -
  FM037_RS01690 (FM037_01690) zapD 382089..382823 (-) 735 WP_144044568.1 cell division protein ZapD -
  FM037_RS01695 (FM037_01695) coaE 382832..383437 (-) 606 WP_144044569.1 dephospho-CoA kinase -
  FM037_RS01700 (FM037_01700) pilD 383482..384393 (-) 912 WP_144044570.1 prepilin peptidase Machinery gene
  FM037_RS01705 (FM037_01705) pilC 384461..385732 (-) 1272 WP_144044571.1 type II secretion system F family protein Machinery gene
  FM037_RS01710 (FM037_01710) pilB 385812..387521 (-) 1710 WP_144044572.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FM037_RS01715 (FM037_01715) - 387633..388067 (-) 435 WP_144044573.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FM037_RS01720 (FM037_01720) nadC 388986..389903 (-) 918 WP_144044574.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45924.28 Da        Isoelectric Point: 10.1525

>NTDB_id=372442 FM037_RS01705 WP_144044571.1 384461..385732(-) (pilC) [Shewanella psychropiezotolerans strain YLB-06]
MATASIIKKRQARAKKANVNSQPKVYTFEWKGVNKAGQKTSGELKGATAAEVRSQLKTQGVSPKSVKKQSASLFQLGAPK
INAMDIAMITRQIATMLSAGVPLVTTIEMLGRGHEKAKMRELLGTILNDVQAGIPLSDALRPHRQYFDDLYVDLVAAGEH
SGSLDAVFDRVATYREKAEALKSKIKKAMFYPAAVVVVAIGVTTLLLLFVVPQFQEIFSGFGAELPAFTQFVIAISEALQ
ASWYIFAVIIIVSVFLFRRAHRNSQLFRDKVDVLVLKIPIIGPILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGN
AVYRIAVLKVRSEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGGLDDMLNKVANIYEMQVDDAVDGLSSLIEPIMMVV
IGTLVGGLIVAMYLPIFEMGKII

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=372442 FM037_RS01705 WP_144044571.1 384461..385732(-) (pilC) [Shewanella psychropiezotolerans strain YLB-06]
ATGGCTACCGCAAGTATAATTAAAAAAAGACAGGCAAGAGCTAAAAAAGCCAATGTTAACAGCCAACCTAAGGTCTACAC
CTTCGAGTGGAAAGGTGTCAATAAAGCCGGTCAAAAAACCTCAGGTGAGCTTAAAGGTGCCACGGCAGCCGAGGTTCGCA
GCCAACTAAAAACTCAGGGGGTCAGCCCTAAATCGGTCAAGAAACAATCGGCGAGTCTATTCCAACTGGGTGCTCCCAAG
ATAAATGCCATGGATATCGCCATGATCACTCGCCAGATAGCGACCATGCTCTCTGCTGGGGTGCCTCTGGTGACAACCAT
AGAGATGTTAGGCCGAGGCCATGAGAAAGCCAAGATGCGTGAGCTCTTAGGCACCATACTCAATGATGTCCAAGCTGGTA
TCCCACTTTCAGATGCCTTAAGGCCCCATAGGCAATATTTCGACGACCTGTATGTGGATTTGGTAGCCGCCGGTGAACAC
TCGGGCTCTCTAGATGCGGTGTTTGATCGCGTCGCAACCTACAGAGAGAAAGCGGAGGCACTTAAATCTAAAATCAAGAA
GGCCATGTTCTACCCCGCTGCCGTGGTTGTAGTTGCCATAGGTGTCACAACGCTACTATTACTCTTCGTCGTGCCTCAAT
TTCAGGAAATTTTTTCCGGTTTTGGTGCCGAATTACCAGCCTTTACCCAGTTCGTCATAGCTATTTCTGAAGCCCTTCAA
GCTTCCTGGTATATATTTGCCGTGATAATCATAGTTAGCGTTTTTCTATTTAGGCGTGCACATAGAAACTCCCAATTATT
CAGAGATAAAGTCGATGTTTTAGTCCTTAAAATTCCGATTATTGGCCCCATACTCCATAAGGCCGCCATGGCGCGTTTCG
CTCGCACACTAGCAACAACATTTGCTGCAGGTGTCCCCCTTATCGATGGTCTGGAGTCTGCTGCTGGTGCTTCGGGAAAT
GCAGTTTATCGAATAGCAGTACTAAAGGTCCGCTCCGAAGTCATGGCTGGAATGCAGATGAATGTTGCCATGCGTACCAC
CAAGCTGTTTCCCGATATGCTGATCCAGATGGTGATGATAGGTGAAGAGTCCGGTGGACTCGATGATATGCTCAACAAGG
TCGCCAATATTTACGAGATGCAGGTCGATGACGCCGTAGATGGACTCTCTAGCCTGATTGAACCTATCATGATGGTGGTG
ATCGGTACCTTAGTCGGTGGTTTAATCGTCGCCATGTATCTTCCCATCTTCGAAATGGGTAAGATTATTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(293-415)

Type II secretion system (T2SS), protein F (T2SSF)

(90-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.878

96.927

0.532
  pilC Acinetobacter baylyi ADP1

50.63

93.853

0.475
  pilC Legionella pneumophila strain ERS1305867

50.25

94.563

0.475
  pilC Acinetobacter baumannii D1279779

50

94.09

0.47
  pilC Vibrio cholerae strain A1552

48.615

93.853

0.456
  pilC Vibrio campbellii strain DS40M4

46.269

95.035

0.44
  pilG Neisseria meningitidis 44/76-A

41.31

93.853

0.388
  pilG Neisseria gonorrhoeae MS11

41.31

93.853

0.388

Multiple sequence alignment