Detailed information NTG0372441

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FM037_RS01700
• Genome accession: NZ_CP041614
• Coordinates: 383482..384393 (-)
• Length: 303 a.a.
• NCBI ID: WP_144044570.1
• Uniprot ID: -
• Organism: Shewanella psychropiezotolerans strain YLB-06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 378482..389393

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FM037_RS01670 (FM037_01670)	-	378870..379769 (-)	900	WP_144044564.1	proline/glycine betaine ABC transporter permease	-
FM037_RS01675 (FM037_01675)	-	379855..380859 (-)	1005	WP_144044565.1	ABC transporter substrate-binding protein	-
FM037_RS01680 (FM037_01680)	mutT	381347..381757 (-)	411	WP_144044566.1	8-oxo-dGTP diphosphatase MutT	-
FM037_RS01685 (FM037_01685)	yacG	381763..381975 (-)	213	WP_144044567.1	DNA gyrase inhibitor YacG	-
FM037_RS01690 (FM037_01690)	zapD	382089..382823 (-)	735	WP_144044568.1	cell division protein ZapD	-
FM037_RS01695 (FM037_01695)	coaE	382832..383437 (-)	606	WP_144044569.1	dephospho-CoA kinase	-
FM037_RS01700 (FM037_01700)	pilD	383482..384393 (-)	912	WP_144044570.1	prepilin peptidase	Machinery gene
FM037_RS01705 (FM037_01705)	pilC	384461..385732 (-)	1272	WP_144044571.1	type II secretion system F family protein	Machinery gene
FM037_RS01710 (FM037_01710)	pilB	385812..387521 (-)	1710	WP_144044572.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FM037_RS01715 (FM037_01715)	-	387633..388067 (-)	435	WP_144044573.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33732.12 Da
• Isoelectric Point: 7.2969

>NTDB_id=372441 FM037_RS01700 WP_144044570.1 383482..384393(-) (pilD) [Shewanella psychropiezotolerans strain YLB-06]
MSELITILSHNLWLFSAIAFIFAAVIGSFLNVVIHRFPVMMKREWQQECNQYLNEYHKELIAPISKKLERAIDGYPEKYN
LIVPGSACPKCKSDIKPWHNLPVIGWLMLRGKCASCSTAISARYPIIELLTGLTVAFLALHFGPTWEFAFATLLTFVLIA
LTGIDLDEMLLPDQLTLPLLWLGLLINLNSTFTSPTDALIGAAAGYMSLWSVFWAFKLLTGKEGMGYGDFKLLAVFGAWF
GWQLLPLIILLSSVVGAIVGIMLIISKKLNQGNPIPFGPYIALAGWIAMIWGSDINTWYLSTL

Nucleotide

• Length: 912 bp

>NTDB_id=372441 FM037_RS01700 WP_144044570.1 383482..384393(-) (pilD) [Shewanella psychropiezotolerans strain YLB-06]
ATGTCAGAATTAATAACAATATTAAGCCACAATTTGTGGCTCTTCAGCGCTATCGCCTTTATCTTTGCTGCCGTCATAGG
CAGCTTCCTCAATGTCGTCATTCATCGTTTCCCAGTGATGATGAAACGTGAGTGGCAGCAAGAATGTAATCAATATCTCA
ACGAGTATCATAAAGAGCTCATAGCTCCCATCTCAAAAAAGCTCGAGCGAGCCATAGATGGCTATCCAGAAAAATATAAC
CTGATCGTTCCGGGCTCAGCCTGCCCGAAATGCAAAAGCGATATCAAGCCCTGGCATAACCTGCCTGTTATTGGCTGGCT
CATGCTAAGAGGTAAATGTGCCTCATGCAGCACAGCTATATCGGCGCGCTACCCAATAATAGAGTTATTGACAGGCTTAA
CCGTGGCTTTCCTCGCTCTTCATTTCGGCCCTACCTGGGAATTTGCCTTCGCAACATTACTCACCTTCGTGCTGATAGCG
CTAACAGGCATAGATCTCGATGAGATGCTACTTCCCGACCAACTCACCCTACCTCTGCTATGGCTAGGCTTACTGATAAA
CCTAAACAGCACTTTTACCAGCCCAACCGACGCACTAATCGGAGCTGCCGCGGGTTATATGAGCCTCTGGAGTGTCTTCT
GGGCATTTAAACTGTTAACGGGTAAGGAAGGTATGGGATATGGAGATTTTAAACTGTTAGCCGTATTTGGGGCCTGGTTT
GGTTGGCAGCTACTGCCACTCATAATACTTCTATCATCTGTAGTCGGCGCGATAGTTGGCATCATGCTGATCATCAGTAA
AAAACTTAATCAAGGTAATCCAATTCCTTTTGGCCCTTATATCGCGCTAGCGGGCTGGATAGCCATGATCTGGGGCAGTG
ATATCAATACTTGGTATCTATCCACCCTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (153-261)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.397	96.37	0.505
pilD	Acinetobacter baumannii D1279779	50	99.67	0.498
pilD	Acinetobacter nosocomialis M2	50	99.67	0.498
pilD	Vibrio campbellii strain DS40M4	50.333	99.01	0.498
pilD	Neisseria gonorrhoeae MS11	45.185	89.109	0.403