Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | FKL89_RS20450 | Genome accession | NZ_CP041352 |
| Coordinates | 869722..870150 (+) | Length | 142 a.a. |
| NCBI ID | WP_156861524.1 | Uniprot ID | - |
| Organism | Casimicrobium huifangae strain SJ-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 864722..875150
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FKL89_RS03905 | - | 864991..865803 (+) | 813 | WP_156861514.1 | DsbC family protein | - |
| FKL89_RS03910 | - | 865884..866999 (+) | 1116 | WP_156861516.1 | SPFH and helix-turn-helix domain-containing protein | - |
| FKL89_RS03915 | - | 867156..867377 (+) | 222 | WP_156861518.1 | hypothetical protein | - |
| FKL89_RS03920 | - | 867393..868565 (+) | 1173 | WP_156861520.1 | zinc ribbon domain-containing protein | - |
| FKL89_RS03925 | - | 868549..869364 (+) | 816 | WP_156861522.1 | DUF3025 domain-containing protein | - |
| FKL89_RS20450 | comP | 869722..870150 (+) | 429 | WP_156861524.1 | pilin | Machinery gene |
| FKL89_RS03935 | tfpZ | 870321..871055 (+) | 735 | WP_156861526.1 | TfpX/TfpZ family type IV pilin accessory protein | - |
| FKL89_RS03940 | coaBC | 871039..872304 (-) | 1266 | WP_156861528.1 | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC | - |
| FKL89_RS03945 | pyk | 872464..873906 (-) | 1443 | WP_156861530.1 | pyruvate kinase | - |
| FKL89_RS03950 | - | 873984..874436 (-) | 453 | WP_162527386.1 | DUF3617 domain-containing protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14843.36 Da Isoelectric Point: 8.4765
>NTDB_id=371414 FKL89_RS20450 WP_156861524.1 869722..870150(+) (comP) [Casimicrobium huifangae strain SJ-1]
MKRVQKGFTLIELMIVIAIIGILAAIAIPMYQDYTKRAKVSEVIGAASPCKLSVAEYMSSNNNTLPPDMVASGCQTVVTN
QYVDGLTWTGTRIEVTSKVTGAAGLVTLIPQAVTGAVDWVCGGAGTTVAVAYLPTSCRGTKT
MKRVQKGFTLIELMIVIAIIGILAAIAIPMYQDYTKRAKVSEVIGAASPCKLSVAEYMSSNNNTLPPDMVASGCQTVVTN
QYVDGLTWTGTRIEVTSKVTGAAGLVTLIPQAVTGAVDWVCGGAGTTVAVAYLPTSCRGTKT
Nucleotide
Download Length: 429 bp
>NTDB_id=371414 FKL89_RS20450 WP_156861524.1 869722..870150(+) (comP) [Casimicrobium huifangae strain SJ-1]
ATGAAACGTGTTCAGAAGGGCTTCACCCTTATCGAATTGATGATCGTGATCGCGATCATCGGCATTCTGGCGGCTATCGC
TATTCCGATGTATCAGGACTACACGAAGCGTGCTAAGGTTTCTGAAGTTATCGGTGCAGCGTCGCCGTGCAAGCTGTCGG
TTGCTGAGTACATGTCCTCAAACAACAATACGTTGCCCCCGGACATGGTTGCGTCGGGTTGTCAGACTGTCGTTACCAAC
CAATATGTCGACGGCCTCACTTGGACCGGTACGCGAATTGAGGTGACGAGCAAAGTGACTGGCGCTGCCGGCCTTGTGAC
CCTAATTCCTCAAGCGGTAACCGGCGCGGTTGACTGGGTTTGCGGCGGAGCGGGCACGACGGTTGCCGTTGCTTACCTGC
CGACTAGCTGCCGTGGCACGAAGACCTAA
ATGAAACGTGTTCAGAAGGGCTTCACCCTTATCGAATTGATGATCGTGATCGCGATCATCGGCATTCTGGCGGCTATCGC
TATTCCGATGTATCAGGACTACACGAAGCGTGCTAAGGTTTCTGAAGTTATCGGTGCAGCGTCGCCGTGCAAGCTGTCGG
TTGCTGAGTACATGTCCTCAAACAACAATACGTTGCCCCCGGACATGGTTGCGTCGGGTTGTCAGACTGTCGTTACCAAC
CAATATGTCGACGGCCTCACTTGGACCGGTACGCGAATTGAGGTGACGAGCAAAGTGACTGGCGCTGCCGGCCTTGTGAC
CCTAATTCCTCAAGCGGTAACCGGCGCGGTTGACTGGGTTTGCGGCGGAGCGGGCACGACGGTTGCCGTTGCTTACCTGC
CGACTAGCTGCCGTGGCACGAAGACCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
38.298 |
100 |
0.507 |
| comP | Acinetobacter baylyi ADP1 |
46 |
100 |
0.486 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
46.715 |
96.479 |
0.451 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
38.182 |
100 |
0.444 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
36.97 |
100 |
0.43 |
| pilE | Neisseria gonorrhoeae MS11 |
36.527 |
100 |
0.43 |
| pilA2 | Legionella pneumophila str. Paris |
44.118 |
95.775 |
0.423 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.601 |
100 |
0.394 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
36.62 |
100 |
0.366 |