Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FLM21_RS05340 Genome accession   NZ_CP041335
Coordinates   1098230..1099462 (-) Length   410 a.a.
NCBI ID   WP_148714573.1    Uniprot ID   -
Organism   Chitinolyticbacter meiyuanensis strain SYBC-H1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1093230..1104462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM21_RS05310 - 1093996..1094766 (-) 771 WP_187360099.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  FLM21_RS05315 - 1094882..1095631 (-) 750 WP_148714568.1 GNAT family N-acetyltransferase -
  FLM21_RS05320 - 1095737..1095916 (-) 180 WP_222846779.1 DNA gyrase inhibitor YacG -
  FLM21_RS05325 zapD 1095913..1096671 (-) 759 WP_148714570.1 cell division protein ZapD -
  FLM21_RS05330 coaE 1096732..1097355 (-) 624 WP_148714571.1 dephospho-CoA kinase -
  FLM21_RS05335 pilD 1097358..1098224 (-) 867 WP_148714572.1 A24 family peptidase Machinery gene
  FLM21_RS05340 pilC 1098230..1099462 (-) 1233 WP_148714573.1 type II secretion system F family protein Machinery gene
  FLM21_RS05345 pilB 1099477..1101186 (-) 1710 WP_148714574.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FLM21_RS05350 - 1101472..1102272 (-) 801 WP_187360100.1 inner membrane protein YpjD -
  FLM21_RS05355 ffh 1102359..1103708 (+) 1350 WP_148714576.1 signal recognition particle protein -
  FLM21_RS05360 rpsP 1103809..1104057 (+) 249 WP_148714577.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44925.13 Da        Isoelectric Point: 10.1086

>NTDB_id=371301 FLM21_RS05340 WP_148714573.1 1098230..1099462(-) (pilC) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
MARPPARAAAAKVKEFTFAWEGKDRSGKVIKGEMRATGEAVLRNHLRRQGINVVKIKKQRLKAGRRITELDVTMFTRQLA
TMLKSGVPLLTAFDIVAKGHNNASMTKLLMEIKSDIETGSSMTQAFRKHPAYFDSLYCNLIQAGEQAGILDSLLARLATY
KEKILAVKKKIKSALFYPTAVIVAAFVITAVIMIFVIPAFKDLFSSFGADLPAPTLLVIALSDFFVSYWWAIFGGIFGGI
WAFLKAWRRSEAMQIAMDRFMLKLPIIGEIMKNATIARWSRTLSTMFAAGVPLVESLDSVAGASGNYIYKMATKKIQTEV
ATGVSLTVAMQNAQVFPNMVLQMASIGEESGSLDAMLSKVADYYEEEVDNAVEALSSLMEPIIMVVLGTLIGGLVIAMYL
PIFKMGEAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=371301 FLM21_RS05340 WP_148714573.1 1098230..1099462(-) (pilC) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
ATGGCAAGACCTCCAGCTCGTGCCGCAGCCGCCAAGGTCAAAGAGTTCACCTTCGCCTGGGAAGGCAAGGATCGCAGTGG
CAAGGTGATCAAAGGTGAAATGCGCGCCACGGGTGAAGCCGTATTGCGCAATCACCTGCGTCGGCAGGGCATCAACGTTG
TTAAAATCAAAAAACAGCGCCTAAAGGCCGGCCGACGCATCACAGAACTCGACGTAACGATGTTTACCCGCCAATTAGCC
ACCATGCTGAAATCCGGCGTCCCCTTGCTCACCGCGTTCGACATTGTCGCCAAGGGCCACAACAACGCCTCAATGACCAA
GCTACTAATGGAGATCAAATCAGACATTGAAACTGGCTCTTCAATGACCCAGGCATTTCGTAAACACCCAGCTTACTTCG
ATAGCTTATACTGCAATTTGATTCAAGCCGGCGAACAGGCAGGCATTTTGGATAGCCTATTGGCCCGGCTTGCAACATAT
AAAGAAAAAATCCTGGCAGTCAAGAAAAAAATCAAGTCAGCCCTATTTTACCCGACGGCGGTGATTGTAGCTGCATTTGT
GATCACCGCTGTGATCATGATTTTCGTCATCCCTGCATTCAAGGATCTTTTTTCAAGCTTTGGCGCAGATTTGCCAGCCC
CAACTTTGTTAGTTATTGCCCTATCGGATTTCTTCGTGAGCTACTGGTGGGCCATCTTCGGAGGTATATTTGGCGGCATT
TGGGCTTTTCTAAAAGCATGGCGCCGCTCCGAGGCTATGCAAATCGCAATGGACCGCTTTATGTTGAAATTACCGATTAT
TGGCGAGATCATGAAGAACGCGACTATTGCACGTTGGTCCCGTACGTTATCCACAATGTTCGCCGCCGGTGTACCACTGG
TAGAATCGCTTGATTCCGTGGCAGGAGCGTCTGGAAATTATATATATAAAATGGCAACCAAGAAGATTCAAACGGAAGTG
GCCACTGGGGTAAGCCTAACCGTGGCCATGCAAAATGCTCAAGTCTTTCCGAACATGGTGCTACAAATGGCCTCTATTGG
TGAAGAGTCCGGCTCGCTAGATGCCATGTTAAGCAAAGTTGCCGACTACTATGAAGAAGAAGTGGACAACGCCGTCGAGG
CCCTCTCAAGCCTCATGGAGCCCATCATCATGGTTGTGCTTGGCACGTTGATCGGGGGCTTGGTCATTGCAATGTATCTG
CCAATTTTCAAAATGGGCGAAGCAGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.523

97.073

0.529
  pilG Neisseria gonorrhoeae MS11

52.645

96.829

0.51
  pilG Neisseria meningitidis 44/76-A

52.393

96.829

0.507
  pilC Pseudomonas stutzeri DSM 10701

50.99

98.537

0.502
  pilC Acinetobacter baumannii D1279779

51.508

97.073

0.5
  pilC Acinetobacter baylyi ADP1

50.378

96.829

0.488
  pilC Vibrio cholerae strain A1552

40.441

99.512

0.402
  pilC Vibrio campbellii strain DS40M4

40.602

97.317

0.395

Multiple sequence alignment