Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FLM21_RS05335 Genome accession   NZ_CP041335
Coordinates   1097358..1098224 (-) Length   288 a.a.
NCBI ID   WP_148714572.1    Uniprot ID   -
Organism   Chitinolyticbacter meiyuanensis strain SYBC-H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1092358..1103224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM21_RS05305 - 1093196..1094011 (+) 816 WP_148714566.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  FLM21_RS05310 - 1093996..1094766 (-) 771 WP_187360099.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  FLM21_RS05315 - 1094882..1095631 (-) 750 WP_148714568.1 GNAT family N-acetyltransferase -
  FLM21_RS05320 - 1095737..1095916 (-) 180 WP_222846779.1 DNA gyrase inhibitor YacG -
  FLM21_RS05325 zapD 1095913..1096671 (-) 759 WP_148714570.1 cell division protein ZapD -
  FLM21_RS05330 coaE 1096732..1097355 (-) 624 WP_148714571.1 dephospho-CoA kinase -
  FLM21_RS05335 pilD 1097358..1098224 (-) 867 WP_148714572.1 A24 family peptidase Machinery gene
  FLM21_RS05340 pilC 1098230..1099462 (-) 1233 WP_148714573.1 type II secretion system F family protein Machinery gene
  FLM21_RS05345 pilB 1099477..1101186 (-) 1710 WP_148714574.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FLM21_RS05350 - 1101472..1102272 (-) 801 WP_187360100.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30950.82 Da        Isoelectric Point: 6.8272

>NTDB_id=371300 FLM21_RS05335 WP_148714572.1 1097358..1098224(-) (pilD) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
MIDSLVEDPLPYSGFLFLLGLLVGSFLNVVIHRLPKMIEAEFRHECATLNLGDDAPPPARASYNLVVPRSACPHCGHQIT
ALENIPIVSYLVLRGRCRGCDARISPRYPLVELLTALLSATVAWMFGPSLAGLAAVVLTWALIALIFIDADTYLLPDSIT
LPLLWLGLLINLGDAGFTSLTSAVVGAVAGYLSLWTVYWAFKLLTGKEGMGYGDFKLLAALGAWFGWQVLPVIILLSSLA
GAVIGIALVLAAKRGFGKPMPFGPYLGIAGWLTLLCGPQLQQLLFPTF

Nucleotide


Download         Length: 867 bp        

>NTDB_id=371300 FLM21_RS05335 WP_148714572.1 1097358..1098224(-) (pilD) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
ATGATCGATTCACTTGTTGAAGACCCGCTGCCTTATAGCGGGTTTTTGTTCCTACTCGGTCTGCTCGTGGGCAGTTTTCT
CAACGTCGTCATCCATCGCCTACCCAAGATGATCGAGGCGGAATTTCGCCACGAATGCGCGACGCTCAACCTGGGCGACG
ATGCGCCACCGCCTGCCAGAGCGAGCTATAACCTTGTAGTCCCCCGTTCGGCCTGCCCGCACTGCGGGCATCAGATCACC
GCGCTGGAGAATATCCCGATCGTGAGTTATCTCGTGCTGCGCGGCCGCTGCCGCGGCTGTGACGCACGAATCAGCCCGCG
CTACCCATTGGTCGAATTACTCACCGCGCTGCTCAGTGCCACAGTGGCGTGGATGTTTGGCCCCAGCTTGGCTGGCCTTG
CCGCGGTCGTGCTCACCTGGGCGCTGATCGCACTGATCTTCATCGATGCGGATACCTACCTGTTGCCGGATTCGATCACG
CTGCCCCTGCTCTGGCTGGGTTTGCTGATCAATCTAGGTGACGCTGGCTTCACCTCGCTGACAAGCGCGGTGGTTGGTGC
AGTTGCTGGCTATCTGTCGTTATGGACCGTCTACTGGGCATTCAAACTGCTCACCGGCAAGGAGGGCATGGGTTATGGCG
ACTTCAAGTTGCTTGCCGCACTTGGCGCTTGGTTCGGCTGGCAAGTGCTACCGGTGATCATTCTGCTGTCGTCGCTGGCC
GGTGCAGTCATCGGCATTGCACTGGTACTCGCCGCAAAGCGTGGTTTCGGCAAGCCGATGCCATTCGGCCCCTACTTGGG
CATCGCCGGCTGGCTCACGCTGTTATGTGGGCCACAGTTGCAACAACTGCTGTTCCCCACCTTCTAG

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(137-246)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

53.405

96.875

0.517
  pilD Vibrio cholerae strain A1552

54.613

94.097

0.514
  pilD Neisseria gonorrhoeae MS11

55.426

89.583

0.497
  pilD Acinetobacter baumannii D1279779

53.008

92.361

0.49
  pilD Acinetobacter nosocomialis M2

52.632

92.361

0.486

Multiple sequence alignment