Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FLM21_RS04060 Genome accession   NZ_CP041335
Coordinates   851951..853318 (+) Length   455 a.a.
NCBI ID   WP_148714341.1    Uniprot ID   -
Organism   Chitinolyticbacter meiyuanensis strain SYBC-H1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 846951..858318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM21_RS04035 - 847509..847949 (+) 441 WP_148714336.1 N-acetyltransferase -
  FLM21_RS04040 ttcA 848052..848999 (+) 948 WP_148714337.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  FLM21_RS04045 - 848999..849787 (+) 789 WP_148714338.1 polyamine aminopropyltransferase -
  FLM21_RS04050 - 849884..850378 (+) 495 WP_148714339.1 RNA pyrophosphohydrolase -
  FLM21_RS04055 - 850390..851967 (+) 1578 WP_148714340.1 nitrogen regulation protein NR(II) -
  FLM21_RS04060 pilR 851951..853318 (+) 1368 WP_148714341.1 sigma-54 dependent transcriptional regulator Regulator
  FLM21_RS04065 - 853325..854020 (+) 696 WP_148714342.1 YoaK family protein -
  FLM21_RS04070 ampD 854007..854588 (+) 582 WP_148714343.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FLM21_RS04075 - 854624..856513 (+) 1890 WP_148714344.1 potassium transporter Kup -
  FLM21_RS04080 - 856556..857203 (-) 648 WP_148714345.1 pyrimidine 5'-nucleotidase -
  FLM21_RS04085 - 857251..857685 (-) 435 WP_148714346.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49664.70 Da        Isoelectric Point: 5.0104

>NTDB_id=371299 FLM21_RS04060 WP_148714341.1 851951..853318(+) (pilR) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
MARKPRNARRVLVVDDEVDLAELLELTLIKMGLDVDTAGGVAEARGMLARTAYDLVLTDMRMQDGEGLEIVQHIQDKRLD
VPVAVITAYGSTQNAVAALKAGAFDYLAKPVSLEQLRTLVKSALRLEDSGESAPVEVASADRPLLGESAAIRQVLELVEK
LARSQAPVYITGESGSGKERAARLIHARSNRAEQPFVAVNCGAIPENLMESEFFGYKKGAFTGADQDRDGFFQAATGGTL
FLDEVADLPLAMQVKLLRAIQERKVRKVGSTAEDSVDVRLISATHQNLARCVEAGKFRQDLYYRLNVIELKMPPLREMGD
DIVLIARQVLARLAQQNGMTMPEVSSDALRALRQYAFPGNVRELENTLERALALSDGLSITAEDLQLQPQAFEGEAEGGG
AGGPLQDYLDKVERNAILDALEKTNGNRTQAAKLLGVTFRSLRYRMDRLSLAGKD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=371299 FLM21_RS04060 WP_148714341.1 851951..853318(+) (pilR) [Chitinolyticbacter meiyuanensis strain SYBC-H1]
ATGGCGAGAAAACCTAGAAATGCCCGCCGTGTGCTGGTGGTCGACGACGAGGTCGATCTTGCCGAGCTGCTCGAACTCAC
GCTGATCAAGATGGGGCTGGACGTCGACACCGCTGGCGGCGTGGCGGAGGCCCGCGGCATGCTGGCGCGCACCGCCTACG
ACCTGGTGCTGACCGACATGCGCATGCAGGATGGCGAGGGGCTGGAGATTGTCCAGCACATCCAGGACAAGCGACTCGAT
GTGCCGGTGGCCGTGATCACCGCCTACGGCAGCACGCAGAACGCGGTGGCAGCGCTCAAGGCCGGTGCGTTCGATTACCT
TGCCAAGCCGGTGTCGCTGGAACAGCTGCGCACGCTGGTGAAATCGGCACTGCGCCTGGAAGACTCGGGCGAATCGGCGC
CGGTCGAGGTGGCCAGCGCTGATCGGCCGCTGCTCGGCGAATCGGCGGCCATCCGCCAAGTGCTGGAGCTGGTGGAGAAG
CTGGCGCGCAGCCAGGCGCCGGTCTACATCACCGGGGAATCGGGCAGCGGCAAGGAGCGCGCGGCGCGGCTGATCCACGC
CCGCAGCAACCGCGCCGAGCAGCCCTTCGTGGCGGTGAACTGCGGCGCCATCCCCGAGAACCTGATGGAAAGCGAGTTCT
TCGGCTACAAAAAGGGCGCCTTCACCGGGGCCGATCAGGACAGAGACGGCTTCTTTCAGGCCGCTACCGGCGGCACACTG
TTCCTCGATGAAGTGGCGGACCTGCCGCTGGCGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAGCGCAAGGTACGCAA
GGTGGGCAGCACGGCAGAGGATTCGGTCGACGTTCGGCTGATTTCCGCCACCCACCAGAACCTGGCGCGCTGTGTGGAAG
CCGGCAAGTTTCGCCAGGATCTGTATTACCGGCTCAACGTGATCGAGCTCAAGATGCCGCCGCTACGCGAGATGGGCGAC
GACATCGTACTGATCGCCCGGCAGGTGCTGGCACGCCTGGCGCAGCAGAACGGCATGACCATGCCGGAGGTATCGAGCGA
TGCGCTGAGGGCGCTGCGCCAGTATGCATTCCCCGGCAATGTGCGTGAGCTGGAGAACACGCTGGAGCGGGCGCTGGCGC
TCTCCGACGGGTTGAGCATCACCGCCGAAGACCTGCAGTTGCAGCCACAGGCCTTCGAGGGCGAGGCAGAAGGTGGCGGC
GCGGGCGGCCCGTTGCAGGATTACCTCGACAAGGTAGAGCGCAACGCCATCCTCGACGCGCTGGAAAAGACCAATGGCAA
CCGTACCCAGGCTGCCAAACTCTTGGGCGTGACCTTCCGCTCGTTGCGCTACCGGATGGACCGGCTGAGTCTGGCCGGCA
AGGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-120)

Sigma-54 interaction domain (Sigma54_activat)

(144-310)

Bacterial regulatory protein, Fis family (HTH_8)

(409-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.072

98.022

0.569
  pilR Acinetobacter baumannii strain A118

46.405

100

0.468
  luxO Vibrio cholerae strain A1552

38.288

97.582

0.374

Multiple sequence alignment