Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FK538_RS12850 Genome accession   NZ_CP041295
Coordinates   2671396..2673534 (-) Length   712 a.a.
NCBI ID   WP_171526199.1    Uniprot ID   -
Organism   Acinetobacter indicus strain 80-1-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2666396..2678534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK538_RS12835 (FK538_12835) - 2668863..2669699 (-) 837 WP_168370768.1 hypothetical protein -
  FK538_RS12840 (FK538_12840) aroB 2669712..2670794 (-) 1083 WP_168370769.1 3-dehydroquinate synthase -
  FK538_RS12845 (FK538_12845) aroK 2670817..2671359 (-) 543 WP_016658449.1 shikimate kinase AroK -
  FK538_RS12850 (FK538_12850) pilQ 2671396..2673534 (-) 2139 WP_171526199.1 type IV pilus secretin PilQ Machinery gene
  FK538_RS12855 (FK538_12855) pilP 2673595..2674122 (-) 528 WP_034598246.1 pilus assembly protein PilP Machinery gene
  FK538_RS12860 (FK538_12860) pilO 2674122..2674841 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  FK538_RS12865 (FK538_12865) pilN 2674838..2675473 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  FK538_RS12870 (FK538_12870) pilM 2675473..2676531 (-) 1059 WP_168370771.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 76830.01 Da        Isoelectric Point: 5.0549

>NTDB_id=371057 FK538_RS12850 WP_171526199.1 2671396..2673534(-) (pilQ) [Acinetobacter indicus strain 80-1-2]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPSQPAAYQLEQPSRLVLDFDKAQQTLKQASI
PVATREASSVDVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQAAVTPVTVQQTAQGISNIGFQRGAEGEGQVVI
DLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDAQNDGGNGVITIQSAGSYEYMAYQAENKLTIS
LKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITDGKNASNSRGGTNSGSGADPLGDS
VGSLLSPRGTVSVDPRTNTLIINDTAQKIDQIRGMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGIMNNNHL
LVGGSDTTLWNLREPELDEERGGYTYEIERPQNLNVDLGVTSAGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPK
VLTADKQQAKVASGTQIPYQSAEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMNLNITSDSPGAPTPTGQLTINKNS
INTNVLVDNGETVVLGGIFEQQTANQQTKVPFLGDIPYLGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=371057 FK538_RS12850 WP_171526199.1 2671396..2673534(-) (pilQ) [Acinetobacter indicus strain 80-1-2]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCTGTTGCGATGGCCGTCATGCAAGTGGCCAATGCGCAGGTCAGCAT
TACCAATATTGTACCAATGCAAATTCCAGGACAAGGTACTGAAATTCGTGTCATGTTCAATGGCTTGCCATCTCAGCCTG
CAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTGCTGGATTTTGATAAAGCCCAGCAAACCTTAAAGCAGGCCAGCATT
CCGGTTGCAACCCGGGAAGCCAGCTCGGTGGATGTCAGTTCCGATGCCCAGCGTGCACGTTTAACGGTTAATCTGGCTGA
AGCGGGTGCTTTTACTACCCGTGTTGAAGGCAATACTTTTATTCTTAAAATTAACAGCACTCAGGCAGCCGTAACGCCAG
TGACGGTACAGCAGACGGCTCAAGGCATATCGAATATCGGCTTTCAGCGTGGTGCAGAAGGGGAAGGTCAGGTGGTAATT
GACCTGGCAGGCAGCAATACCCCGGTCGATGTACAACAGCAAGGCAGTAAAATTATTGTCCGTACCTTGGGTAATAAAAT
TCCTGCACATCTGGCACGCCGTTTAAACGTCAATGATTTTGCCACCCCGGTATCTACCATTGATGCGCAAAATGATGGTG
GCAATGGGGTAATTACTATTCAGTCTGCCGGAAGCTATGAATATATGGCGTATCAGGCAGAAAATAAACTGACCATCAGT
CTGAAACGTCCGGTAGATAAGAACCCGTTCAAACCGCGTGCAGCACAAAGCTATACCGGCAAAAAGATTTCTTTAGATTT
CCAGGATATTGAAGTGCGTCGTGTGCTGCAGTTACTGGCTGATTTTACCGGAATTAACATGGTTGCCGCCGATACGGTAC
AAGGCAATATCACCTTACGTCTCAAAGATGTGCCGTGGGATCAGGCACTAGATATTATTTTAAAAACCAAAAATCTGGAT
AAACGCCGTAATGGCAATGTGATCTGGATTGCACCCGTCGCAGAGCTGATCAAGGCCGAAGAAGAAGAAGCCAAAGCGAT
TGCACAAAGCGTCAAGCTGGCGCCGTTGCAAACCGAATATATCCAGTTAAATTATGCCAAGGCTGCCGATATTGAGAAAC
TGATTACTGATGGTAAAAACGCATCCAATTCTCGAGGCGGCACAAATTCGGGTTCAGGGGCAGATCCACTCGGTGATAGC
GTCGGTAGTTTGCTCAGCCCTCGCGGTACGGTGTCGGTTGATCCACGAACCAACACCCTGATTATTAATGATACTGCACA
AAAAATTGACCAGATTCGCGGCATGATTGACTTGCTGGATGTGTCTGTGAAACAGGTGATGATTGAAGCGCGTATTGTGC
GTGCCACCACTGACTTTACCAAAGAGATGGGGGTGAAGTGGGGCATCCTGTCACAAGGGATCATGAATAATAATCATCTT
CTGGTCGGTGGTAGTGATACCACACTGTGGAATTTACGTGAGCCAGAGCTTGATGAAGAGCGTGGTGGTTATACCTATGA
AATTGAACGTCCGCAAAACCTGAATGTCGATTTAGGAGTGACCAGTGCAGGTGCTAGCCGCATTGCCTTTGGTTTAATCA
GTTTATCTGACTTTATGCTAGATTTGGAATTGTCTGCCCTACAAGCTGATGGTTATGGTGAAGTGATTTCGACACCGAAA
GTACTGACTGCTGATAAGCAACAGGCCAAAGTTGCTTCAGGTACGCAGATCCCGTATCAGTCTGCTGAAGGTGGTGGTGT
CAATGCGGTGTCAACCACCGAGTTTATTGATGCAACTTTAAGTCTGGACGTAACGCCAAGTATTACCCCGGATGGTAAAG
TACAGATGAACCTGAATATCACCAGTGATAGTCCGGGAGCACCAACGCCGACCGGTCAGCTGACCATTAACAAAAACTCG
ATCAATACCAATGTACTGGTCGATAATGGTGAAACTGTCGTGCTTGGTGGTATTTTTGAGCAGCAGACAGCCAATCAGCA
AACCAAAGTGCCATTCTTGGGGGATATTCCGTATTTAGGCCGTTTATTCCGTAAAGATATTAAATCGGACAATAAACGTG
AGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(41-121)

Secretin and TonB N terminus short domain (STN)

(290-332)

Bacterial type II and III secretion system protein (Secretin)

(546-704)

Bacterial type II/III secretion system short domain (Secretin_N)

(359-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.593

100

0.777
  pilQ Acinetobacter baumannii strain A118

76.454

100

0.775
  comQ Acinetobacter baylyi ADP1

73.95

100

0.742
  pilQ Pseudomonas aeruginosa PAK

40.514

98.455

0.399
  pilQ Legionella pneumophila strain ERS1305867

39.021

100

0.392
  pilQ Legionella pneumophila strain Lp02

39.021

100

0.392

Multiple sequence alignment