Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   FK538_RS12860 Genome accession   NZ_CP041295
Coordinates   2674122..2674841 (-) Length   239 a.a.
NCBI ID   WP_005180513.1    Uniprot ID   N9KYM2
Organism   Acinetobacter indicus strain 80-1-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2669122..2679841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FK538_RS12840 (FK538_12840) aroB 2669712..2670794 (-) 1083 WP_168370769.1 3-dehydroquinate synthase -
  FK538_RS12845 (FK538_12845) aroK 2670817..2671359 (-) 543 WP_016658449.1 shikimate kinase AroK -
  FK538_RS12850 (FK538_12850) pilQ 2671396..2673534 (-) 2139 WP_171526199.1 type IV pilus secretin PilQ Machinery gene
  FK538_RS12855 (FK538_12855) pilP 2673595..2674122 (-) 528 WP_034598246.1 pilus assembly protein PilP Machinery gene
  FK538_RS12860 (FK538_12860) pilO 2674122..2674841 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  FK538_RS12865 (FK538_12865) pilN 2674838..2675473 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  FK538_RS12870 (FK538_12870) pilM 2675473..2676531 (-) 1059 WP_168370771.1 pilus assembly protein PilM Machinery gene
  FK538_RS12875 (FK538_12875) ponA 2676703..2679282 (+) 2580 WP_168370772.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27087.71 Da        Isoelectric Point: 5.1311

>NTDB_id=371059 FK538_RS12860 WP_005180513.1 2674122..2674841(-) (pilO) [Acinetobacter indicus strain 80-1-2]
MSLDQYEEMNQDPVAAPKKKMTLDKFLQQWNTLDPNNYGSWPFSVKLTIWIFIIILIAFLGYFLAIKPKLDAISNARAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLQQLPKETEIPGLVEDVNVTGVNSGLRFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFTITAGENKEKKTDIPQITYVAKAKTYRYVGNTDAQAGNSTTPATGAAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=371059 FK538_RS12860 WP_005180513.1 2674122..2674841(-) (pilO) [Acinetobacter indicus strain 80-1-2]
ATGAGTCTCGATCAATATGAAGAAATGAATCAGGATCCTGTTGCTGCGCCAAAGAAAAAAATGACGCTGGATAAATTCCT
GCAGCAATGGAATACCTTAGATCCGAATAACTATGGCAGCTGGCCGTTTTCCGTCAAGCTGACCATCTGGATCTTTATCA
TTATTTTAATTGCCTTCCTGGGCTATTTCCTGGCCATCAAGCCGAAGCTGGATGCAATTTCCAATGCGCGTGCACAAGAG
CAGAACCTGCTGAATGAGTTTCGTGAAAAAGATTCCAAACTGCGTAATTTGCAGCAATATCAGGCGCAGTTACAGGAAAT
GGAAGCCAACTTTAACCAGCAGCTACAACAGTTGCCAAAAGAAACCGAAATTCCAGGTCTGGTTGAAGATGTGAACGTTA
CGGGCGTGAACTCAGGCCTAAGATTTAAAAATATCCGTCTGGAAAATGAAATCAAGCAAGAGTTCTTTATCGAGCAGCCA
ATTTCGATTGAAGCCACCGGTGATTATCACGCTTTTGGTTCTTTTGTCAGTGGTACAGCCGCTTTACCGCGAATTGTGAC
CATGCATGATTTCACCATTACTGCCGGTGAAAACAAGGAAAAGAAAACCGATATTCCGCAAATTACCTATGTCGCGAAAG
CCAAGACCTATCGCTATGTCGGGAATACCGATGCACAGGCCGGGAATAGCACGACTCCAGCCACAGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KYM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

69.748

99.582

0.695
  comO Acinetobacter baylyi ADP1

67.213

100

0.686

Multiple sequence alignment