Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   C8250_RS17180 Genome accession   NZ_CP048835
Coordinates   3800397..3801035 (-) Length   212 a.a.
NCBI ID   WP_138357777.1    Uniprot ID   A0ABW8CCW9
Organism   Streptomyces sp. So13.3     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3795397..3806035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8250_RS17165 (C8250_017185) - 3797043..3797969 (+) 927 WP_138357758.1 hypothetical protein -
  C8250_RS17170 (C8250_017190) - 3798059..3798856 (+) 798 WP_138357759.1 hypothetical protein -
  C8250_RS17175 (C8250_017195) clpX 3798939..3800222 (-) 1284 WP_138357760.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  C8250_RS17180 (C8250_017200) clpP 3800397..3801035 (-) 639 WP_138357777.1 ATP-dependent Clp protease proteolytic subunit Regulator
  C8250_RS17185 (C8250_017205) clpP 3801142..3801747 (-) 606 WP_164295743.1 ATP-dependent Clp protease proteolytic subunit Regulator
  C8250_RS17190 (C8250_017210) tig 3802009..3803418 (-) 1410 WP_138357762.1 trigger factor -
  C8250_RS17205 (C8250_017225) - 3803988..3805133 (-) 1146 WP_138357763.1 site-specific integrase -
  C8250_RS17210 (C8250_017230) - 3805133..3805342 (-) 210 WP_138357764.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23209.47 Da        Isoelectric Point: 4.4655

>NTDB_id=370893 C8250_RS17180 WP_138357777.1 3800397..3801035(-) (clpP) [Streptomyces sp. So13.3]
MAEAPGVLGAEARYIIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISVYINSPG
GSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGSPGKRMALPNARILIHQPYSETGRGQVSDLEIAANEIIRMR
AQLEEMLSKHSTTPIEQIREDIERDKILTAEEALAYGLVDQIVSTRKTSASV

Nucleotide


Download         Length: 639 bp        

>NTDB_id=370893 C8250_RS17180 WP_138357777.1 3800397..3801035(-) (clpP) [Streptomyces sp. So13.3]
ATGGCCGAGGCGCCAGGTGTGCTCGGCGCCGAGGCCCGCTACATCATTCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGT
GCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGTGTGCAGATCGACGACGCCTCGGCCA
ACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGCGACATCTCCGTCTACATCAACTCGCCCGGT
GGCTCGTTCACGGCCCTCACGGCCATCTACGACACCATGCAGTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCA
GGCGGCCTCCGCCGCGGCCGTGCTGCTCGCGGCCGGCAGCCCCGGCAAGCGGATGGCGCTGCCGAACGCGCGGATCCTGA
TCCACCAGCCGTACAGCGAGACCGGCCGGGGTCAGGTCTCCGACCTGGAGATCGCGGCCAACGAGATCATCCGGATGCGC
GCGCAGCTGGAGGAGATGCTCTCCAAGCACTCCACCACGCCGATCGAGCAGATCCGCGAGGACATCGAGCGCGACAAGAT
CCTGACCGCCGAGGAAGCCCTCGCGTACGGTCTGGTCGACCAGATCGTCTCCACCCGTAAGACCTCCGCGTCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(25-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

89.623

0.453
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

89.151

0.429
  clpP Streptococcus mutans UA159

45.455

93.396

0.425
  clpP Streptococcus pyogenes MGAS315

44.845

91.509

0.41
  clpP Streptococcus pyogenes JRS4

44.845

91.509

0.41
  clpP Streptococcus thermophilus LMG 18311

43.814

91.509

0.401
  clpP Streptococcus thermophilus LMD-9

43.814

91.509

0.401
  clpP Lactococcus lactis subsp. cremoris KW2

43.979

90.094

0.396
  clpP Streptococcus pneumoniae TIGR4

43.523

91.038

0.396
  clpP Streptococcus pneumoniae Rx1

43.523

91.038

0.396
  clpP Streptococcus pneumoniae D39

43.523

91.038

0.396
  clpP Streptococcus pneumoniae R6

43.523

91.038

0.396
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.932

90.094

0.387