Detailed information NTG0370892

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: C8250_RS17175
• Genome accession: NZ_CP048835
• Coordinates: 3798939..3800222 (-)
• Length: 427 a.a.
• NCBI ID: WP_138357760.1
• Uniprot ID: A0ABW8CCW1
• Organism: Streptomyces sp. So13.3
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3793939..3805222

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C8250_RS17160 (C8250_017180)	-	3794292..3796922 (-)	2631	WP_138357757.1	valine--tRNA ligase	-
C8250_RS17165 (C8250_017185)	-	3797043..3797969 (+)	927	WP_138357758.1	hypothetical protein	-
C8250_RS17170 (C8250_017190)	-	3798059..3798856 (+)	798	WP_138357759.1	hypothetical protein	-
C8250_RS17175 (C8250_017195)	clpX	3798939..3800222 (-)	1284	WP_138357760.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
C8250_RS17180 (C8250_017200)	clpP	3800397..3801035 (-)	639	WP_138357777.1	ATP-dependent Clp protease proteolytic subunit	Regulator
C8250_RS17185 (C8250_017205)	clpP	3801142..3801747 (-)	606	WP_164295743.1	ATP-dependent Clp protease proteolytic subunit	Regulator
C8250_RS17190 (C8250_017210)	tig	3802009..3803418 (-)	1410	WP_138357762.1	trigger factor	-
C8250_RS17205 (C8250_017225)	-	3803988..3805133 (-)	1146	WP_138357763.1	site-specific integrase	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46824.75 Da
• Isoelectric Point: 4.9341

>NTDB_id=370892 C8250_RS17175 WP_138357760.1 3798939..3800222(-) (clpX) [Streptomyces sp. So13.3]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAESSEVRWEDLPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENNGRGHDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDV
ENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI
DTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIQAANQFQEIMPEDLVKFGMIPEFIGRLPVITSVHNLDRE
ALLQILVEPKNALVKQYQKLFELDGVELEFEHSALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVITD
EVVHSNVNPTLVPREPRIIGKGEQKSA

Nucleotide

• Length: 1284 bp

>NTDB_id=370892 C8250_RS17175 WP_138357760.1 3798939..3800222(-) (clpX) [Streptomyces sp. So13.3]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGGCCTGGTGTGTACATCTGCGATGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTGGCCGAGTCCT
CCGAAGTGCGGTGGGAGGATCTGCCCAAGCCTCGGGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCTCTCTCGGTCGCGGTCTACAACCATTACAAGCGGGTGCAGGCCGGTGAGAACAACGGCCGGGGCCACGA
CGACGCGATCGAGCTCGCCAAGTCCAACATCCTGCTCCTCGGCCCCACCGGCTCCGGCAAGACGCTGCTCGCGCAGACCC
TCGCCCGGATGCTGAACGTGCCGTTCGCCATCGCCGACGCCACCGCGCTCACCGAGGCGGGCTATGTCGGCGAGGACGTC
GAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGACGA
GATCGACAAGGTCGCTCGCAAGAGTGAAAATCCTTCGATCACGCGGGATGTGTCCGGTGAGGGCGTTCAGCAGGCGCTGC
TGAAGATCCTGGAAGGCACGACGGCCTCGGTGCCGCCGCAGGGCGGGCGCAAGCACCCGCACCAGGAGTTCATCCAGATC
GACACCACGAATGTGCTGTTCATCGTGGGTGGTGCCTTCGCGGGCCTGGAGAAGATCATCGAATCGCGGGCCGGCGCCAA
GGGCATCGGCTTCGGCGCGACGATCCGCTCCAAGCGCGAGATCCAGGCCGCGAACCAGTTCCAGGAGATCATGCCGGAGG
ACCTGGTGAAGTTCGGGATGATTCCCGAGTTCATCGGCCGGCTGCCGGTCATCACCTCCGTCCACAACCTGGACCGTGAG
GCGCTGCTGCAGATCCTCGTGGAGCCGAAGAACGCCCTGGTGAAGCAGTACCAGAAGCTCTTCGAACTCGACGGTGTGGA
GCTGGAGTTCGAGCACAGCGCGCTGGAAGCCATCGCCGACCAGGCGATCCTCCGCCAGACCGGCGCGCGCGGGTTGCGCG
CCATCATGGAGGAGGTGCTGATGTCCGTGATGTACGAGGTGCCGTCCCGCAAGGACGTCGCCCGCGTCGTCATCACCGAC
GAGGTCGTGCACTCCAACGTCAACCCGACCCTGGTGCCGCGCGAGCCGCGCATCATCGGCAAGGGCGAGCAGAAGAGCGC
ATAG

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-311)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-394)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.84	93.911	0.6
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.583	96.487	0.536