Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FJN13_RS13620 Genome accession   NZ_CP041169
Coordinates   3123049..3124257 (+) Length   402 a.a.
NCBI ID   WP_141152568.1    Uniprot ID   -
Organism   Alteromonas mediterranea strain PT11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3118049..3129257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJN13_RS13595 (FJN13_13595) ampE 3118996..3119865 (-) 870 WP_015067808.1 beta-lactamase regulator AmpE -
  FJN13_RS13600 (FJN13_13600) ampD 3119896..3120432 (-) 537 WP_141152565.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FJN13_RS13605 (FJN13_13605) - 3120608..3121126 (+) 519 WP_012519426.1 TIGR02281 family clan AA aspartic protease -
  FJN13_RS13610 (FJN13_13610) nadC 3121146..3122000 (+) 855 WP_141152566.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FJN13_RS13615 (FJN13_13615) - 3122536..3122961 (+) 426 WP_141152567.1 pilin -
  FJN13_RS13620 (FJN13_13620) pilC 3123049..3124257 (+) 1209 WP_141152568.1 type II secretion system F family protein Machinery gene
  FJN13_RS13625 (FJN13_13625) pilD 3124375..3125268 (+) 894 WP_141152569.1 prepilin peptidase Machinery gene
  FJN13_RS13630 (FJN13_13630) coaE 3125290..3125904 (+) 615 WP_141152570.1 dephospho-CoA kinase -
  FJN13_RS13635 (FJN13_13635) zapD 3126118..3126870 (+) 753 WP_015067815.1 cell division protein ZapD -
  FJN13_RS13640 (FJN13_13640) yacG 3126961..3127188 (+) 228 WP_012519434.1 DNA gyrase inhibitor YacG -
  FJN13_RS13645 (FJN13_13645) - 3127381..3128253 (+) 873 WP_141152571.1 aspartoacylase -
  FJN13_RS13650 (FJN13_13650) mutT 3128345..3128728 (-) 384 WP_020746438.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43543.16 Da        Isoelectric Point: 9.6225

>NTDB_id=370082 FJN13_RS13620 WP_141152568.1 3123049..3124257(+) (pilC) [Alteromonas mediterranea strain PT11]
MAKATATFTWQGKDRNGQSRKGEISATSLSEAKNLLRRQGISANKVKKLAKPLFGGAKKITPADISVISRQIATMLAAGV
TLIQSLEMIAQGHANPSMRKLLGEVTDEVKSGNPLSSALRKHPLYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEAL
KSKIKKAMFYPIAVLVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTQLVLAISRFVQDYGIFIAMGVAAAGFMFVRAH
RRSQKLRDTVDRNILKIPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVYRDAILHIRKEVAGGMPMH
VAMRATQVFPDMVTQMIAIGEESGSVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFEMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=370082 FJN13_RS13620 WP_141152568.1 3123049..3124257(+) (pilC) [Alteromonas mediterranea strain PT11]
ATGGCAAAAGCAACGGCAACGTTTACTTGGCAAGGAAAAGACAGGAATGGTCAATCTCGCAAAGGTGAAATTTCGGCCAC
CTCGCTTTCTGAAGCCAAAAACCTTTTACGTCGCCAAGGTATTTCTGCGAATAAGGTGAAAAAATTAGCTAAACCTTTGT
TTGGTGGTGCAAAAAAAATAACACCCGCAGATATATCTGTCATATCACGGCAAATCGCTACTATGTTGGCCGCAGGTGTT
ACGCTTATCCAATCTTTAGAAATGATAGCGCAGGGCCACGCAAACCCATCAATGCGTAAACTGCTTGGTGAAGTCACCGA
TGAAGTCAAATCCGGTAACCCACTGTCATCCGCACTTAGAAAACACCCCCTTTATTTTGACGACCTGTATTGTGATTTGG
TTTACACGGGCGAACAGTCAGGTGCCCTTGAAACTATTTACGACCGTATTGCCACCTATAAAGAAAAAGCCGAAGCACTA
AAATCAAAGATCAAAAAAGCGATGTTTTACCCTATCGCGGTTTTGGTTGTTGCTTTTATTGTTACGACTATTCTGCTTAT
TTTCGTTGTGCCTCAGTTTGAAGAAATTTTTAGCAGCTTTGGCGCTGAGCTCCCTGCGTTTACCCAGTTGGTACTGGCTA
TATCGCGGTTTGTACAAGACTACGGCATTTTTATCGCTATGGGTGTTGCTGCGGCAGGCTTTATGTTTGTGCGTGCCCAT
AGGCGCAGTCAAAAGCTTCGCGATACGGTAGACCGTAATATTTTAAAAATTCCTGTTATCGGCGAAATACTCAAAAAAGC
CAGTATCGCTCGCTTTACCCGTACATTGGCCACTACCTTTGCGGCGGGTGTACCGCTTATCGGCGCGTTAGAATCAGCAG
CGGGTGCATCGGGTAATGCAGTTTATCGAGATGCAATACTTCACATACGTAAAGAAGTGGCTGGCGGTATGCCTATGCAT
GTTGCCATGCGCGCAACCCAAGTATTTCCAGACATGGTGACGCAAATGATTGCCATAGGTGAAGAGTCTGGCTCTGTCGA
TGAGATGCTAAGTAAAATTGCCACCATTTACGAAGCAGAAGTTGATGACATGGTCGACGGCTTAACCAGCTTGCTTGAGC
CTATGATCATGGCCGTATTAGGTGTGGTTATTGGCGGCTTGATTGTGGCCATGTACTTACCTATATTCGAAATGGGTAAC
GTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.794

99.005

0.582
  pilC Legionella pneumophila strain ERS1305867

53.133

99.254

0.527
  pilC Acinetobacter baumannii D1279779

52.357

100

0.525
  pilC Acinetobacter baylyi ADP1

52.897

98.756

0.522
  pilC Vibrio cholerae strain A1552

45.32

100

0.458
  pilG Neisseria gonorrhoeae MS11

45.32

100

0.458
  pilG Neisseria meningitidis 44/76-A

44.554

100

0.448
  pilC Vibrio campbellii strain DS40M4

44

99.502

0.438
  pilC Thermus thermophilus HB27

36.75

99.502

0.366

Multiple sequence alignment