Detailed information NTG0370083

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FJN13_RS13625
• Genome accession: NZ_CP041169
• Coordinates: 3124375..3125268 (+)
• Length: 297 a.a.
• NCBI ID: WP_141152569.1
• Uniprot ID: -
• Organism: Alteromonas mediterranea strain PT11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3119375..3130268

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FJN13_RS13600 (FJN13_13600)	ampD	3119896..3120432 (-)	537	WP_141152565.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
FJN13_RS13605 (FJN13_13605)	-	3120608..3121126 (+)	519	WP_012519426.1	TIGR02281 family clan AA aspartic protease	-
FJN13_RS13610 (FJN13_13610)	nadC	3121146..3122000 (+)	855	WP_141152566.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FJN13_RS13615 (FJN13_13615)	-	3122536..3122961 (+)	426	WP_141152567.1	pilin	-
FJN13_RS13620 (FJN13_13620)	pilC	3123049..3124257 (+)	1209	WP_141152568.1	type II secretion system F family protein	Machinery gene
FJN13_RS13625 (FJN13_13625)	pilD	3124375..3125268 (+)	894	WP_141152569.1	prepilin peptidase	Machinery gene
FJN13_RS13630 (FJN13_13630)	coaE	3125290..3125904 (+)	615	WP_141152570.1	dephospho-CoA kinase	-
FJN13_RS13635 (FJN13_13635)	zapD	3126118..3126870 (+)	753	WP_015067815.1	cell division protein ZapD	-
FJN13_RS13640 (FJN13_13640)	yacG	3126961..3127188 (+)	228	WP_012519434.1	DNA gyrase inhibitor YacG	-
FJN13_RS13645 (FJN13_13645)	-	3127381..3128253 (+)	873	WP_141152571.1	aspartoacylase	-
FJN13_RS13650 (FJN13_13650)	mutT	3128345..3128728 (-)	384	WP_020746438.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32916.01 Da
• Isoelectric Point: 6.4461

>NTDB_id=370083 FJN13_RS13625 WP_141152569.1 3124375..3125268(+) (pilD) [Alteromonas mediterranea strain PT11]
MDAIITLSQLYPAIFYTLIFLVSLMVGSFLNVVIYRLPIMMERSWQHEYQSYFTESDTSLDLPNAPSQDDTFNLVKPDST
CPRCGHKIRAWENIPIISYLFLRGKCAKCKVGISVRYPLVELFTAIACTFAAYQFGATPQALWAVVFTYVLVALLFIDID
KMLLPDQLTLPLLWLGLLLSTQNIFVGTTDAIIGAAAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAFTGWQGLPV
IILLSSLVGAIAGIAIMVVQNKGKSLAIPFGPYLAVAGWLTLLFKTEIITTYLDYVL

Nucleotide

• Length: 894 bp

>NTDB_id=370083 FJN13_RS13625 WP_141152569.1 3124375..3125268(+) (pilD) [Alteromonas mediterranea strain PT11]
ATGGACGCTATAATAACCCTTAGCCAACTATACCCCGCTATATTCTATACCCTTATTTTCTTAGTGAGCTTAATGGTTGG
CAGCTTTTTAAACGTAGTGATCTACCGCTTACCCATTATGATGGAGCGTAGCTGGCAGCATGAATACCAAAGCTATTTTA
CCGAAAGTGATACCAGCTTAGACTTACCTAACGCTCCATCGCAAGACGATACCTTTAACCTGGTAAAACCAGACAGCACC
TGCCCGCGCTGCGGCCACAAAATTCGCGCATGGGAAAACATTCCAATAATTAGCTACCTATTTCTAAGGGGCAAATGTGC
CAAGTGCAAGGTAGGTATTTCAGTACGCTATCCGCTGGTTGAGCTGTTCACTGCCATCGCCTGCACCTTCGCAGCCTATC
AGTTTGGCGCTACACCTCAAGCGCTTTGGGCCGTGGTTTTTACCTACGTACTCGTGGCTTTGCTATTTATCGACATAGAT
AAAATGTTGTTGCCAGACCAGCTCACGCTTCCTTTACTTTGGCTTGGGCTGCTGTTAAGTACTCAAAACATTTTTGTTGG
TACGACCGACGCCATTATTGGCGCGGCGGCAGGCTATTTAAGCTTGTGGTCGGTATATTGGCTATTTAAGCTTGTTACGG
GCAAGGAAGGCATGGGCTATGGCGATTTTAAATTGCTTGCCGCCTTAGGTGCGTTCACAGGCTGGCAGGGGCTACCCGTT
ATCATCTTACTTTCATCATTGGTGGGCGCCATTGCAGGTATTGCTATTATGGTTGTGCAAAATAAGGGGAAGTCCTTAGC
CATCCCCTTTGGCCCTTACCTTGCTGTAGCAGGGTGGCTTACGCTGCTTTTTAAAACTGAAATTATCACTACTTACCTCG
ATTACGTGCTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-135)

• Type IV leader peptidase family (Peptidase_A24) (146-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.325	97.306	0.529
pilD	Vibrio campbellii strain DS40M4	53.103	97.643	0.519
pilD	Acinetobacter baumannii D1279779	50.538	93.939	0.475
pilD	Acinetobacter nosocomialis M2	50.538	93.939	0.475
pilD	Neisseria gonorrhoeae MS11	50.769	87.542	0.444