Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FGA12_RS16875 Genome accession   NZ_CP041153
Coordinates   3840655..3841920 (+) Length   421 a.a.
NCBI ID   WP_033540803.1    Uniprot ID   -
Organism   Shewanella marisflavi strain ECSMB14101     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3835655..3846920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGA12_RS16860 (FGA12_16860) nadC 3836405..3837286 (+) 882 WP_033540801.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FGA12_RS19480 (FGA12_16865) - 3838296..3838730 (+) 435 WP_309147283.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FGA12_RS16870 (FGA12_16870) pilB 3838840..3840549 (+) 1710 WP_033540802.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FGA12_RS16875 (FGA12_16875) pilC 3840655..3841920 (+) 1266 WP_033540803.1 type II secretion system F family protein Machinery gene
  FGA12_RS16880 (FGA12_16880) pilD 3841969..3842880 (+) 912 WP_033540804.1 A24 family peptidase Machinery gene
  FGA12_RS16885 (FGA12_16885) coaE 3842905..3843510 (+) 606 WP_033540805.1 dephospho-CoA kinase -
  FGA12_RS16890 (FGA12_16890) zapD 3843519..3844253 (+) 735 WP_033540806.1 cell division protein ZapD -
  FGA12_RS16895 (FGA12_16895) yacG 3844302..3844514 (+) 213 WP_033540807.1 DNA gyrase inhibitor YacG -
  FGA12_RS16900 (FGA12_16900) mutT 3844515..3844904 (+) 390 WP_033540808.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45894.18 Da        Isoelectric Point: 10.1801

>NTDB_id=369957 FGA12_RS16875 WP_033540803.1 3840655..3841920(+) (pilC) [Shewanella marisflavi strain ECSMB14101]
MASASLAKTTNKKQKAAKAQPKVVTFQWKGTNRDGKKTSGELRGSSSAEIKAILKSQGVNPKAVKKKPEPLFKRDPKIKA
MDIAMITRQIATMLAAGVPIVTTLEMLGRGHEKPRMRELLGAIVNDVQAGIPLSDALKPHRQYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAVLVTSLLLLFVVPQFEEIFAGFGAELPAFTQMIIGISRWLQSSW
YIFVIAIILGIWSFKRAHLKSQSFRNRIDEIVLKIPVIGDILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RSALTKVRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDEMLNKVANIYEMQVDDAVDGLSSLIEPMMMVVIGT
LVGGLIVGMYLPIFQLGNVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=369957 FGA12_RS16875 WP_033540803.1 3840655..3841920(+) (pilC) [Shewanella marisflavi strain ECSMB14101]
ATGGCTAGCGCATCACTCGCAAAAACAACCAATAAAAAGCAAAAAGCTGCCAAGGCACAACCCAAAGTTGTCACCTTTCA
GTGGAAAGGCACCAACCGCGACGGTAAAAAAACCAGTGGTGAACTGCGCGGCTCCTCATCGGCAGAAATTAAGGCAATTT
TAAAATCTCAAGGAGTAAACCCCAAAGCCGTAAAGAAAAAGCCTGAACCACTTTTCAAGCGAGATCCCAAAATCAAGGCG
ATGGATATCGCCATGATCACCCGCCAGATAGCCACCATGCTGGCGGCGGGCGTACCTATCGTAACCACCTTAGAGATGTT
AGGCCGCGGCCATGAAAAGCCCAGAATGAGAGAATTACTTGGTGCCATAGTAAATGATGTCCAAGCAGGTATTCCTCTTT
CAGATGCTTTAAAACCTCATAGGCAATATTTCGATGATCTTTATGTCGACTTAGTCGCCGCAGGTGAGCACTCAGGTTCC
CTCGATGCGGTATTCGATCGCATCGCAACTTACCGCGAAAAGGCAGAGGCGCTCAAATCAAAAATTAAAAAGGCCATGTT
CTATCCCGCGGCCGTGGTTGTAGTAGCTGTTTTGGTAACGTCTCTTCTATTACTCTTTGTTGTGCCACAATTTGAAGAAA
TTTTTGCAGGTTTTGGCGCTGAGCTTCCCGCATTTACCCAGATGATTATTGGAATTTCAAGATGGCTACAGTCATCTTGG
TACATCTTTGTCATTGCAATTATTTTAGGTATTTGGTCATTTAAACGTGCTCACCTTAAATCACAAAGCTTCCGAAATAG
AATCGACGAAATAGTCCTAAAAATTCCAGTAATAGGAGACATTCTACATAAAGCAGCCATGGCTCGATTTGCTCGTACTC
TAGCAACCACCTTCGCAGCAGGTGTACCGCTCATCGATGGTTTAGAATCCGCCGCTGGCGCATCTGGCAACTATGTTTAT
CGCAGTGCGCTCACCAAAGTACGTACAGAGGTGATGTCAGGAATGCAGATGAACGTTGCAATGCGCACCACAGGCCTGTT
CCCAGACATGCTCATTCAAATGGTAATGATTGGCGAAGAATCAGGTGGCCTCGATGAGATGCTGAATAAAGTCGCAAACA
TCTATGAGATGCAAGTCGATGATGCCGTCGATGGCTTATCTAGCCTTATCGAACCAATGATGATGGTGGTGATTGGCACG
CTCGTCGGTGGACTTATCGTCGGCATGTATCTGCCTATCTTCCAGCTAGGTAATGTTGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.468

93.824

0.539
  pilC Acinetobacter baumannii D1279779

50.244

97.387

0.489
  pilC Legionella pneumophila strain ERS1305867

50.495

95.962

0.485
  pilC Acinetobacter baylyi ADP1

49.631

96.675

0.48
  pilC Vibrio cholerae strain A1552

47.549

96.912

0.461
  pilC Vibrio campbellii strain DS40M4

45.409

95.724

0.435
  pilG Neisseria meningitidis 44/76-A

42.079

95.962

0.404
  pilG Neisseria gonorrhoeae MS11

42.079

95.962

0.404

Multiple sequence alignment