Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FGA12_RS16880 Genome accession   NZ_CP041153
Coordinates   3841969..3842880 (+) Length   303 a.a.
NCBI ID   WP_033540804.1    Uniprot ID   -
Organism   Shewanella marisflavi strain ECSMB14101     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3836969..3847880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGA12_RS19480 (FGA12_16865) - 3838296..3838730 (+) 435 WP_309147283.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FGA12_RS16870 (FGA12_16870) pilB 3838840..3840549 (+) 1710 WP_033540802.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FGA12_RS16875 (FGA12_16875) pilC 3840655..3841920 (+) 1266 WP_033540803.1 type II secretion system F family protein Machinery gene
  FGA12_RS16880 (FGA12_16880) pilD 3841969..3842880 (+) 912 WP_033540804.1 A24 family peptidase Machinery gene
  FGA12_RS16885 (FGA12_16885) coaE 3842905..3843510 (+) 606 WP_033540805.1 dephospho-CoA kinase -
  FGA12_RS16890 (FGA12_16890) zapD 3843519..3844253 (+) 735 WP_033540806.1 cell division protein ZapD -
  FGA12_RS16895 (FGA12_16895) yacG 3844302..3844514 (+) 213 WP_033540807.1 DNA gyrase inhibitor YacG -
  FGA12_RS16900 (FGA12_16900) mutT 3844515..3844904 (+) 390 WP_033540808.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 33784.96 Da        Isoelectric Point: 6.6914

>NTDB_id=369958 FGA12_RS16880 WP_033540804.1 3841969..3842880(+) (pilD) [Shewanella marisflavi strain ECSMB14101]
MTDFIQLMAQYPLLFAAISFVFAATIGSFLNVVIHRLPVMMKREWQQECNQYLEEYHKSTIKGVEDKLAQPIDDYPEKYN
LIVPGSACTKCKTNIKPWHNLPIFGWLMLGGKCANCKTNISARYPIIEAITGLAVAYLAYYFGPSWQFVFATILTFGLIA
LTGIDLDEMLLPDQITLPLLWLGLLINLDSTFVSLSDAVIGAAAGYMSLWSVFWGFKLLTGKEGMGYGDFKLLAVFGAWF
GWQLLPLIILLSSVVGTLVGLLLIVNKKINSGNPIPFGPYIALAGWIAMVWGERITNWYLSTL

Nucleotide


Download         Length: 912 bp        

>NTDB_id=369958 FGA12_RS16880 WP_033540804.1 3841969..3842880(+) (pilD) [Shewanella marisflavi strain ECSMB14101]
ATGACTGATTTTATCCAATTAATGGCTCAGTATCCTTTACTGTTTGCCGCAATCTCTTTCGTTTTCGCTGCGACTATTGG
CAGCTTTTTAAATGTGGTGATTCACCGCCTTCCGGTAATGATGAAAAGGGAATGGCAGCAAGAGTGCAATCAGTACCTTG
AGGAATACCATAAATCCACTATCAAGGGGGTTGAAGACAAATTAGCTCAGCCAATTGATGATTACCCTGAAAAATATAAC
CTCATCGTCCCTGGCTCTGCCTGTACTAAATGCAAAACCAATATTAAGCCTTGGCACAATTTGCCCATTTTTGGTTGGTT
AATGCTCGGCGGGAAATGTGCTAACTGCAAAACTAACATATCTGCCAGATACCCTATTATTGAGGCTATTACGGGGCTGG
CTGTTGCCTATCTCGCCTATTACTTTGGTCCAAGCTGGCAATTTGTCTTCGCGACTATACTTACCTTTGGCCTAATAGCC
TTAACAGGCATAGATCTCGATGAGATGTTGCTACCCGATCAGATCACCCTGCCACTCTTATGGCTTGGCCTTCTCATTAA
CCTTGATAGCACCTTTGTCTCGCTAAGCGATGCAGTAATTGGCGCTGCGGCGGGTTATATGAGCCTATGGAGTGTCTTCT
GGGGCTTCAAGCTGCTAACAGGTAAAGAAGGTATGGGCTATGGCGACTTTAAACTACTGGCCGTGTTCGGCGCTTGGTTT
GGCTGGCAGTTACTTCCCCTGATCATCCTACTCTCATCTGTTGTAGGCACACTCGTTGGATTACTTCTTATCGTCAACAA
GAAGATCAACTCAGGTAACCCCATTCCATTTGGGCCCTATATTGCGTTAGCTGGTTGGATAGCCATGGTCTGGGGAGAGA
GAATCACTAACTGGTACCTATCCACCCTTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-142)

Type IV leader peptidase family (Peptidase_A24)

(153-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

50

99.01

0.495
  pilD Vibrio campbellii strain DS40M4

49.333

99.01

0.488
  pilD Acinetobacter nosocomialis M2

47.735

94.719

0.452
  pilD Acinetobacter baumannii D1279779

47.387

94.719

0.449
  pilD Neisseria gonorrhoeae MS11

44.444

95.05

0.422

Multiple sequence alignment