Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FJQ87_RS03635 Genome accession   NZ_CP041151
Coordinates   805280..806542 (-) Length   420 a.a.
NCBI ID   WP_140930625.1    Uniprot ID   -
Organism   Shewanella sp. SNU WT4 strain SNU WT1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 800280..811542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ87_RS03610 (FJQ87_03610) mutT 801995..802396 (-) 402 WP_140930615.1 8-oxo-dGTP diphosphatase MutT -
  FJQ87_RS03615 (FJQ87_03615) yacG 802393..802611 (-) 219 WP_140930617.1 DNA gyrase inhibitor YacG -
  FJQ87_RS03620 (FJQ87_03620) zapD 802738..803469 (-) 732 WP_140930619.1 cell division protein ZapD -
  FJQ87_RS03625 (FJQ87_03625) coaE 803477..804082 (-) 606 WP_140930621.1 dephospho-CoA kinase -
  FJQ87_RS03630 (FJQ87_03630) pilD 804090..805019 (-) 930 WP_140930623.1 A24 family peptidase Machinery gene
  FJQ87_RS03635 (FJQ87_03635) pilC 805280..806542 (-) 1263 WP_140930625.1 type II secretion system F family protein Machinery gene
  FJQ87_RS03640 (FJQ87_03640) pilB 806602..808308 (-) 1707 WP_140930627.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FJQ87_RS18910 (FJQ87_03645) - 808324..808746 (-) 423 WP_140930629.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FJQ87_RS03650 (FJQ87_03650) nadC 809576..810454 (-) 879 WP_140930631.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FJQ87_RS03655 (FJQ87_03655) ampD 810689..811303 (+) 615 WP_140930633.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45776.93 Da        Isoelectric Point: 9.8926

>NTDB_id=369920 FJQ87_RS03635 WP_140930625.1 805280..806542(-) (pilC) [Shewanella sp. SNU WT4 strain SNU WT1]
MASSLAKSKKSSDKAVKAQPKVFTFAWKGINRDGKRTSGELKGTSNAEVKAILKTQGITTKSINKKSAPLFKSEKKITAM
DIAMVTRQIATMLAAGVPIVTTLELLGRGHEKAKMRELLANIINDLKTGIPLSDSIRPYRQYFDELYVDLVAAGEHSGAL
EQVFDRIALYKEKAEALKSKIKKAMFYPAAVVVVAIGVTTLLLLMVVPQFQEIFNGFGAELPAFTQFIIAISEALQASWH
YFAGGIIIGIWLFKRAHHNSQLFRDRVDEMVLKIPAIGDILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYR
QALLKVRQEVMAGMQMNVAMQTTKLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGTL
VGGLIVGMYLPIFEMGNVVS

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=369920 FJQ87_RS03635 WP_140930625.1 805280..806542(-) (pilC) [Shewanella sp. SNU WT4 strain SNU WT1]
ATGGCTAGCTCACTTGCCAAAAGCAAAAAATCCAGCGACAAAGCCGTTAAAGCTCAACCTAAGGTATTTACCTTTGCTTG
GAAAGGCATAAATCGCGACGGTAAACGCACCAGCGGTGAGCTCAAGGGCACAAGTAACGCTGAAGTTAAAGCCATACTTA
AGACACAAGGTATTACCACTAAATCTATTAACAAAAAGTCGGCACCATTATTTAAAAGTGAGAAGAAAATAACGGCCATG
GATATCGCTATGGTCACTCGTCAAATCGCAACCATGTTAGCCGCTGGCGTGCCGATTGTGACTACCTTAGAACTATTAGG
GCGCGGCCATGAAAAAGCTAAAATGCGCGAATTATTGGCCAATATCATTAACGACCTAAAAACCGGTATTCCACTTTCTG
ACTCGATTCGCCCTTATCGCCAGTATTTTGATGAACTCTATGTCGACTTAGTGGCAGCAGGCGAGCATTCCGGCGCCCTT
GAGCAAGTGTTTGACCGCATTGCCCTTTATAAAGAAAAGGCCGAAGCCTTAAAGTCTAAAATTAAAAAAGCCATGTTTTA
CCCTGCCGCTGTGGTAGTAGTGGCAATTGGCGTAACCACCTTATTATTGCTAATGGTAGTGCCGCAATTTCAAGAAATCT
TTAATGGCTTTGGCGCCGAACTGCCCGCCTTTACCCAGTTTATTATTGCCATTTCTGAAGCGCTGCAAGCCTCGTGGCAT
TACTTTGCCGGCGGCATTATTATTGGCATCTGGTTATTTAAACGCGCCCACCATAACTCACAATTATTTCGCGATCGCGT
CGATGAAATGGTACTCAAAATCCCCGCCATAGGTGATATTTTGCATAAAGCGGCGATGGCACGCTTTGCCCGCACCTTAG
CTACCACGTTTGCCGCGGGCGTACCATTAATTGATGGCCTAGAAAGTGCTGCCGGCGCCTCTGGCAATGCCGTATACCGC
CAGGCTTTACTAAAGGTCCGCCAAGAAGTGATGGCCGGCATGCAAATGAACGTTGCCATGCAAACCACTAAATTATTCCC
TGACATGCTGATCCAAATGGTGATGATAGGTGAAGAGTCGGGATCCCTTGATAACATGCTCAACAAGGTCGCCAATATCT
ATGAGATGCAGGTGGATGACGCCGTTGATGGCTTATCAAGCTTAATTGAACCTATCATGATGGTAGTAATTGGTACCTTA
GTCGGCGGCCTGATAGTAGGCATGTACTTACCTATTTTTGAAATGGGTAATGTGGTTAGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(86-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.43

94.048

0.512
  pilC Acinetobacter baumannii D1279779

49.631

96.905

0.481
  pilC Acinetobacter baylyi ADP1

50.63

94.524

0.479
  pilC Legionella pneumophila strain ERS1305867

49.257

96.19

0.474
  pilC Vibrio cholerae strain A1552

46.929

96.905

0.455
  pilC Vibrio campbellii strain DS40M4

44.527

95.714

0.426
  pilG Neisseria meningitidis 44/76-A

40.796

95.714

0.39
  pilG Neisseria gonorrhoeae MS11

40.796

95.714

0.39

Multiple sequence alignment