Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G3M73_RS00520 Genome accession   NZ_CP048605
Coordinates   106005..107432 (-) Length   475 a.a.
NCBI ID   WP_000980590.1    Uniprot ID   -
Organism   Escherichia coli strain PapRG-06-5     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101005..112432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M73_RS00490 (G3M73_00490) yeeZ 101060..101884 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  G3M73_RS00495 (G3M73_00495) yeeY 101930..102859 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  G3M73_RS00500 (G3M73_00500) yoeI 103074..103136 (+) 63 WP_010723108.1 membrane protein YoeI -
  G3M73_RS00505 (G3M73_00505) plaP 103126..104484 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  G3M73_RS00510 (G3M73_00510) tsuA 104663..105721 (+) 1059 WP_000492306.1 thiosulfate utilization transporter TsuA/YeeE -
  G3M73_RS00515 (G3M73_00515) tsuB 105735..105962 (+) 228 WP_069906907.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  G3M73_RS00520 (G3M73_00520) sbcB 106005..107432 (-) 1428 WP_000980590.1 exodeoxyribonuclease I Machinery gene
  G3M73_RS00525 (G3M73_00525) dacD 107641..108807 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  G3M73_RS00530 (G3M73_00530) sbmC 108926..109399 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  G3M73_RS00535 (G3M73_00535) yeeA 109598..110656 (+) 1059 WP_001200891.1 FUSC family protein -
  G3M73_RS00540 (G3M73_00540) tmaR 110828..111157 (+) 330 WP_000450409.1 DUF496 family protein -
  G3M73_RS00545 (G3M73_00545) - 111258..111449 (-) 192 Protein_111 EutP/PduV family microcompartment system protein -
  G3M73_RS00550 (G3M73_00550) cobU 111616..112161 (+) 546 WP_032224272.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.79 Da        Isoelectric Point: 5.4720

>NTDB_id=369920 G3M73_RS00520 WP_000980590.1 106005..107432(-) (sbcB) [Escherichia coli strain PapRG-06-5]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=369920 G3M73_RS00520 WP_000980590.1 106005..107432(-) (sbcB) [Escherichia coli strain PapRG-06-5]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCTAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment