Detailed information NTG0369919

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FJQ87_RS03630
• Genome accession: NZ_CP041151
• Coordinates: 804090..805019 (-)
• Length: 309 a.a.
• NCBI ID: WP_140930623.1
• Uniprot ID: A0A4Y6I901
• Organism: Shewanella sp. SNU WT4 strain SNU WT1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 799090..810019

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FJQ87_RS18800	-	799406..799690 (+)	285	WP_240778818.1	substrate-binding domain-containing protein	-
FJQ87_RS03605 (FJQ87_03605)	-	799895..801583 (-)	1689	WP_240778819.1	amidohydrolase	-
FJQ87_RS03610 (FJQ87_03610)	mutT	801995..802396 (-)	402	WP_140930615.1	8-oxo-dGTP diphosphatase MutT	-
FJQ87_RS03615 (FJQ87_03615)	yacG	802393..802611 (-)	219	WP_140930617.1	DNA gyrase inhibitor YacG	-
FJQ87_RS03620 (FJQ87_03620)	zapD	802738..803469 (-)	732	WP_140930619.1	cell division protein ZapD	-
FJQ87_RS03625 (FJQ87_03625)	coaE	803477..804082 (-)	606	WP_140930621.1	dephospho-CoA kinase	-
FJQ87_RS03630 (FJQ87_03630)	pilD	804090..805019 (-)	930	WP_140930623.1	A24 family peptidase	Machinery gene
FJQ87_RS03635 (FJQ87_03635)	pilC	805280..806542 (-)	1263	WP_140930625.1	type II secretion system F family protein	Machinery gene
FJQ87_RS03640 (FJQ87_03640)	pilB	806602..808308 (-)	1707	WP_140930627.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FJQ87_RS18910 (FJQ87_03645)	-	808324..808746 (-)	423	WP_140930629.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 309 a.a.
• Molecular weight: 34422.86 Da
• Isoelectric Point: 7.0172

>NTDB_id=369919 FJQ87_RS03630 WP_140930623.1 804090..805019(-) (pilD) [Shewanella sp. SNU WT4 strain SNU WT1]
MTEFIALMDSQPWLFYSLSFIFAATIGSFLNVVIHRLPIMMKREWQQECHDYLEHNENIKLDPKQLKPILSALRAPQDGY
PAKYNLIVPGSACPKCHTAIKPWQNIPVLGWLLLKGRCGHCSTPISSRYPLVEALTGLLVTVLAWHFGATSAFAWASLLT
FGLVAMTWIDFDEMLLPDQLTLPLLWLGLLLNLNGLYTDIYSAVIGAMAGYLSLWSVFWGFKLLTGKEGMGYGDFKLMAL
FGAWLGWQMLPLIILLSSVLGAVIGIGLMLSKRMEQGSPMPFGPYIALAGWIALLFGESITQWYLASLA

Nucleotide

• Length: 930 bp

>NTDB_id=369919 FJQ87_RS03630 WP_140930623.1 804090..805019(-) (pilD) [Shewanella sp. SNU WT4 strain SNU WT1]
ATGACCGAATTTATCGCCTTAATGGACTCCCAACCTTGGCTGTTTTATAGCCTAAGTTTTATCTTTGCCGCCACCATAGG
CAGTTTTCTTAATGTGGTTATCCATCGCCTGCCGATTATGATGAAGCGCGAATGGCAGCAAGAATGCCATGATTATCTTG
AGCATAACGAGAATATTAAGCTAGACCCTAAGCAGCTCAAACCTATCTTAAGCGCCTTAAGAGCGCCACAAGATGGCTAC
CCCGCTAAATACAATTTAATCGTGCCAGGTTCGGCCTGCCCCAAGTGTCACACTGCCATTAAGCCTTGGCAAAATATCCC
TGTGCTTGGCTGGTTGTTATTAAAAGGCAGGTGCGGCCATTGCAGCACGCCAATTTCTAGTCGCTACCCGTTAGTGGAAG
CCTTAACCGGATTACTAGTGACTGTGCTCGCTTGGCATTTTGGCGCCACCAGCGCTTTTGCTTGGGCAAGCTTATTAACC
TTTGGCTTGGTTGCCATGACTTGGATAGATTTTGATGAGATGCTACTGCCTGATCAACTCACGCTGCCACTATTGTGGTT
AGGGCTGCTACTTAATCTTAATGGTCTTTATACCGATATTTACTCAGCCGTGATTGGCGCCATGGCAGGGTATTTAAGTT
TATGGTCAGTATTTTGGGGCTTTAAATTACTCACAGGCAAAGAAGGCATGGGCTACGGTGATTTTAAGCTAATGGCGCTG
TTTGGCGCTTGGCTTGGTTGGCAAATGCTGCCATTAATTATCTTATTATCATCGGTTTTAGGCGCCGTTATTGGCATAGG
TTTAATGCTAAGTAAACGCATGGAGCAAGGTAGCCCTATGCCGTTTGGCCCTTATATTGCACTCGCAGGTTGGATAGCCC
TACTGTTTGGTGAGTCTATTACTCAGTGGTATTTAGCAAGCTTAGCGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-147)

• Type IV leader peptidase family (Peptidase_A24) (159-266)

3D structure

• AlphaFold DB: A0A4Y6I901

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.171	96.764	0.495
pilD	Vibrio campbellii strain DS40M4	48.993	96.44	0.472
pilD	Acinetobacter nosocomialis M2	47.712	99.029	0.472
pilD	Acinetobacter baumannii D1279779	47.712	99.029	0.472
pilD	Neisseria gonorrhoeae MS11	42.808	94.498	0.405