Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FIV34_RS05990 Genome accession   NZ_CP041046
Coordinates   1309938..1311203 (-) Length   421 a.a.
NCBI ID   WP_139980636.1    Uniprot ID   A0A4Y5Z2X8
Organism   Luteibacter pinisoli strain MAH-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1304938..1316203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV34_RS05965 (FIV34_05965) msrA 1305063..1305737 (-) 675 WP_139980626.1 peptide-methionine (S)-S-oxide reductase MsrA -
  FIV34_RS05970 (FIV34_05970) - 1305876..1307123 (+) 1248 WP_139980628.1 HD-GYP domain-containing protein -
  FIV34_RS05975 (FIV34_05975) - 1307120..1308373 (+) 1254 WP_139980630.1 GGDEF domain-containing phosphodiesterase -
  FIV34_RS05980 (FIV34_05980) coaE 1308387..1308989 (-) 603 WP_139980632.1 dephospho-CoA kinase -
  FIV34_RS05985 (FIV34_05985) - 1308986..1309855 (-) 870 WP_139980634.1 A24 family peptidase -
  FIV34_RS05990 (FIV34_05990) pilC 1309938..1311203 (-) 1266 WP_139980636.1 type II secretion system F family protein Machinery gene
  FIV34_RS05995 (FIV34_05995) pilB 1311345..1313072 (-) 1728 WP_139980638.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FIV34_RS06000 (FIV34_06000) - 1313222..1314094 (+) 873 WP_139985734.1 glycosyltransferase family 2 protein -
  FIV34_RS06005 (FIV34_06005) - 1314091..1314819 (+) 729 WP_139980640.1 class I SAM-dependent methyltransferase -
  FIV34_RS06010 (FIV34_06010) - 1314878..1315969 (+) 1092 WP_170207522.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46128.27 Da        Isoelectric Point: 10.0555

>NTDB_id=369158 FIV34_RS05990 WP_139980636.1 1309938..1311203(-) (pilC) [Luteibacter pinisoli strain MAH-14]
MATATATKNARAVGAARAAVNQLTMYDWTALDKRGKRMKGEMQAKNASLVKAELRRQGMNPQQVRERAKPLFGAAGSTVK
PRDVAIFSRQIATMMASGVPMVQAFDIIAQGQKNVRFKNILVDVRTSIEGGAALHEALAQYPVQFDELYRNLVHAGESAG
VLDTVLDTVATYKERMESIKSKIKKALFYPIMVLVVALLVSMILLLFVVPVFQQTFAEAKAELPAPTQVVVAASQFMQSY
WWLVIGIIVGSVFALIFFKKRSQKFAHFLDRFSLKIPVIGDLLHKSAIARFARTLGVTFHAGVPLVEALDAVAGATGSIV
YGEAVKQMRDDISVGHQLQLSMRQVNLFPNMVVQMTAIGEESGSLDHMLFKVAEFYEEEVNTAVDTLSSLLEPFIMVILG
VLVGGMVISLYLPIFKLAGTV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=369158 FIV34_RS05990 WP_139980636.1 1309938..1311203(-) (pilC) [Luteibacter pinisoli strain MAH-14]
ATGGCTACCGCCACCGCTACGAAGAACGCGCGCGCCGTCGGCGCCGCTCGTGCTGCCGTCAACCAGTTGACGATGTACGA
CTGGACCGCGCTGGACAAGCGCGGCAAGCGCATGAAGGGCGAGATGCAGGCAAAGAATGCCTCGCTCGTCAAGGCCGAAC
TGCGCCGCCAGGGGATGAACCCGCAGCAGGTGCGTGAACGCGCGAAGCCGCTTTTCGGCGCGGCGGGCAGCACGGTCAAA
CCGCGTGACGTCGCCATCTTCAGCCGCCAGATCGCCACCATGATGGCCTCGGGTGTGCCCATGGTGCAGGCGTTTGACAT
CATCGCCCAGGGCCAGAAGAACGTCCGGTTCAAGAACATCCTCGTCGATGTGAGAACCAGCATCGAGGGTGGCGCCGCAC
TCCACGAGGCGCTGGCCCAGTATCCGGTCCAGTTCGACGAGCTCTACCGTAACCTCGTCCATGCGGGCGAGTCCGCCGGT
GTGCTCGATACGGTGCTCGATACTGTCGCGACCTATAAAGAGCGCATGGAGAGCATCAAGTCCAAGATCAAGAAGGCCTT
GTTCTACCCAATCATGGTGCTCGTCGTTGCCCTGCTCGTCTCGATGATCCTGCTGCTGTTCGTGGTCCCGGTGTTCCAGC
AGACCTTCGCCGAAGCCAAGGCCGAGCTGCCGGCGCCCACCCAGGTTGTCGTGGCCGCGTCGCAGTTCATGCAGTCGTAC
TGGTGGCTGGTCATTGGCATTATTGTCGGCTCGGTATTCGCCCTGATCTTCTTCAAGAAACGCTCGCAGAAGTTCGCCCA
CTTCCTCGATCGTTTCTCGCTGAAAATCCCGGTGATCGGTGACCTCCTGCACAAGTCGGCCATCGCCCGCTTCGCCCGTA
CCCTCGGTGTCACCTTCCACGCGGGCGTGCCCCTCGTCGAAGCGCTGGATGCGGTCGCGGGCGCCACCGGCAGCATCGTC
TACGGCGAAGCCGTGAAGCAGATGCGCGACGATATCTCCGTCGGCCACCAGCTCCAGCTCTCCATGCGCCAGGTGAACCT
GTTCCCCAACATGGTGGTGCAGATGACCGCCATCGGCGAGGAATCCGGCTCGCTCGACCACATGCTGTTCAAGGTGGCCG
AGTTCTACGAGGAAGAGGTCAACACCGCGGTGGACACGCTGAGCAGCCTGCTCGAGCCGTTCATCATGGTAATCCTCGGC
GTCCTCGTCGGCGGCATGGTGATCTCGCTGTACCTGCCGATCTTCAAGCTGGCCGGCACGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y5Z2X8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.882

94.774

0.501
  pilC Pseudomonas stutzeri DSM 10701

51.256

94.537

0.485
  pilC Acinetobacter baumannii D1279779

49.37

94.299

0.466
  pilC Acinetobacter baylyi ADP1

48.25

95.012

0.458
  pilG Neisseria meningitidis 44/76-A

40.674

91.686

0.373
  pilG Neisseria gonorrhoeae MS11

40.674

91.686

0.373
  pilC Vibrio campbellii strain DS40M4

39.043

94.299

0.368
  pilC Thermus thermophilus HB27

37.778

96.2

0.363
  pilC Vibrio cholerae strain A1552

38.734

93.824

0.363

Multiple sequence alignment