Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FIU11_RS15565 Genome accession   NZ_CP040990
Coordinates   3231539..3232765 (+) Length   408 a.a.
NCBI ID   WP_004729085.1    Uniprot ID   -
Organism   Vibrio furnissii strain FDAARGOS_777     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3226539..3237765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU11_RS15540 (FIU11_15540) fldB 3226923..3227444 (+) 522 WP_004729075.1 flavodoxin FldB -
  FIU11_RS15545 (FIU11_15545) ampD 3227480..3228034 (-) 555 WP_004729077.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FIU11_RS15550 (FIU11_15550) nadC 3228183..3229070 (+) 888 WP_004729079.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FIU11_RS15555 (FIU11_15555) - 3229317..3229766 (+) 450 WP_004729081.1 pilin -
  FIU11_RS15560 (FIU11_15560) pilB 3229772..3231460 (+) 1689 WP_004729083.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FIU11_RS15565 (FIU11_15565) pilC 3231539..3232765 (+) 1227 WP_004729085.1 type II secretion system F family protein Machinery gene
  FIU11_RS15570 (FIU11_15570) pilD 3232817..3233686 (+) 870 WP_004729087.1 prepilin peptidase Machinery gene
  FIU11_RS15575 (FIU11_15575) coaE 3233689..3234297 (+) 609 WP_004729089.1 dephospho-CoA kinase -
  FIU11_RS15580 (FIU11_15580) zapD 3234330..3235070 (+) 741 WP_004729090.1 cell division protein ZapD -
  FIU11_RS15585 (FIU11_15585) yacG 3235128..3235325 (+) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  FIU11_RS15590 (FIU11_15590) parC 3235431..3237704 (-) 2274 WP_004729093.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44783.05 Da        Isoelectric Point: 10.5674

>NTDB_id=368545 FIU11_RS15565 WP_004729085.1 3231539..3232765(+) (pilC) [Vibrio furnissii strain FDAARGOS_777]
MKPNKAAELKNFRWKGINSSGRKVAGHTLAISEIEVRDKLKEQHIQVKKIKKGSISLLTRLTHRVKTRDITLLTRQLSTM
LTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAMRTASPHFDALYVDLIATGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLWGVLATSAGLLA
LKTARNKSLVFRLKTSRLGLRFPVVGAVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQEVHRHTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=368545 FIU11_RS15565 WP_004729085.1 3231539..3232765(+) (pilC) [Vibrio furnissii strain FDAARGOS_777]
ATGAAACCAAATAAAGCTGCCGAATTGAAAAACTTCCGCTGGAAAGGCATCAACAGCTCCGGGCGAAAAGTTGCCGGACA
CACCTTGGCCATCAGTGAAATCGAAGTGCGCGACAAGCTCAAAGAGCAGCACATTCAGGTGAAGAAGATCAAAAAAGGCA
GCATTTCACTGCTGACTCGCCTCACCCACCGTGTCAAGACTCGCGACATCACCCTGCTTACACGCCAGCTTTCCACCATG
CTGACTACAGGTGTACCCATCGTTCAAGCGTTGAAACTGGTTGGCGACAATCACCGCAAAGCAGAAATGAAATCAATTCT
GGCTCAAGTCACCAAAGGGGTAGAAGCTGGCACCCCAATGTCCAAAGCGATGCGCACCGCCAGCCCACATTTTGATGCGC
TGTACGTTGACCTCATAGCCACCGGCGAGCAATCCGGGAATTTGGCCGAAGTGTTTGAGCGCCTTGCCACCTATCGAGAA
AAAAGCGAACAACTACGCGCCAAAGTGATCAAGGCGCTGATCTATCCGGCGATGGTGATGTTGGTCGCGTTGGGCGTCTC
TTATCTGATGCTGACCATGGTCATTCCCGAGTTTGAAAGCATGTTCAAAGGCTTTGGCGCAGAGCTTCCTTGGTTTACCC
AGCAAATTCTTAAACTCTCCCACGGCGTGCAAGCCTACAGCCTATGGGGCGTACTAGCGACCAGCGCTGGCCTTTTGGCT
CTCAAAACCGCGCGCAACAAATCATTGGTCTTTCGATTGAAAACCAGCCGCCTTGGCTTGCGTTTTCCTGTTGTCGGCGC
GGTCTTAGCCAAGGCAGCCATTGCCAAATTCAGCCGCACATTGGCCACCAGTTTTAGCGCCGGTATACCGATTCTGGCCA
GTTTAAAAACCACCGCCAAAACCGCCGGCAACGTCCATTTTGAAACCGCGATTCAGGAGGTGCATCGCCATACCGCGGCA
GGCATGCCGATGTATATCGCCATGCGCAATACCGACGCATTTCCGGAGATGGTGCTGCAAATGGTAATGATTGGCGAAGA
GTCGGGCAAGCTTGACGACATGCTGAACAAAGTCGCGACCATTTATGAGTTTGAAGTCGACAATACCGTGGACAATCTGG
GGAAAATTCTCGAGCCGCTGATCATCGTCTTTCTGGGAGTGGTCGTTGGCGGGCTGGTGGTTGCGATGTACCTCCCCATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

84.559

100

0.846
  pilC Vibrio campbellii strain DS40M4

73.697

98.775

0.728
  pilC Pseudomonas stutzeri DSM 10701

42.716

99.265

0.424
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Legionella pneumophila strain ERS1305867

41.855

97.794

0.409
  pilC Acinetobacter baylyi ADP1

40.441

100

0.404
  pilG Neisseria gonorrhoeae MS11

38.916

99.51

0.387
  pilG Neisseria meningitidis 44/76-A

38.67

99.51

0.385

Multiple sequence alignment