Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FIU11_RS15570 Genome accession   NZ_CP040990
Coordinates   3232817..3233686 (+) Length   289 a.a.
NCBI ID   WP_004729087.1    Uniprot ID   -
Organism   Vibrio furnissii strain FDAARGOS_777     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3227817..3238686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU11_RS15550 (FIU11_15550) nadC 3228183..3229070 (+) 888 WP_004729079.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FIU11_RS15555 (FIU11_15555) - 3229317..3229766 (+) 450 WP_004729081.1 pilin -
  FIU11_RS15560 (FIU11_15560) pilB 3229772..3231460 (+) 1689 WP_004729083.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FIU11_RS15565 (FIU11_15565) pilC 3231539..3232765 (+) 1227 WP_004729085.1 type II secretion system F family protein Machinery gene
  FIU11_RS15570 (FIU11_15570) pilD 3232817..3233686 (+) 870 WP_004729087.1 prepilin peptidase Machinery gene
  FIU11_RS15575 (FIU11_15575) coaE 3233689..3234297 (+) 609 WP_004729089.1 dephospho-CoA kinase -
  FIU11_RS15580 (FIU11_15580) zapD 3234330..3235070 (+) 741 WP_004729090.1 cell division protein ZapD -
  FIU11_RS15585 (FIU11_15585) yacG 3235128..3235325 (+) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  FIU11_RS15590 (FIU11_15590) parC 3235431..3237704 (-) 2274 WP_004729093.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32204.28 Da        Isoelectric Point: 6.9289

>NTDB_id=368546 FIU11_RS15570 WP_004729087.1 3232817..3233686(+) (pilD) [Vibrio furnissii strain FDAARGOS_777]
MDIFTFYPWLFPTLATLLGLIIGSFLNVVIYRLPKIMEREWRQDCAESFPEYHIEPPQGVLTLSTPRSTCPHCDTPIRII
DNIPVLSWLLLRGKCSQCHAPISARYPLIESFTALCSLAIALQFGFSWFAVALLFFSYVLIAATFIDFDTMLLPDQLTLP
LMWGGIALALAGISPITLHDAVIGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILMSSVVGL
VFGLIQLRLQKRGIDKAFPFGPYLAIAGWLSALYGQAIVGWYFHSVLGF

Nucleotide


Download         Length: 870 bp        

>NTDB_id=368546 FIU11_RS15570 WP_004729087.1 3232817..3233686(+) (pilD) [Vibrio furnissii strain FDAARGOS_777]
ATGGACATTTTTACTTTCTATCCCTGGCTGTTTCCCACGCTGGCCACCTTGCTGGGTCTGATCATCGGCAGTTTTCTCAA
TGTGGTGATCTATCGCTTGCCGAAAATCATGGAGCGCGAGTGGCGTCAAGACTGTGCCGAGTCCTTTCCGGAATACCACA
TTGAACCGCCCCAAGGTGTGTTAACACTCAGCACGCCCCGTTCCACCTGCCCACATTGCGATACACCGATTCGTATCATC
GACAATATTCCGGTGCTAAGCTGGCTGCTACTGCGCGGCAAGTGCTCGCAGTGCCACGCACCTATTAGCGCTCGCTACCC
ACTGATTGAATCGTTTACGGCGTTATGCAGCTTGGCGATTGCTTTGCAGTTTGGTTTTAGCTGGTTTGCGGTGGCTTTGC
TGTTTTTCAGTTATGTGCTGATTGCGGCAACCTTCATCGACTTCGACACCATGCTGCTGCCTGACCAACTGACGCTACCG
TTGATGTGGGGCGGTATCGCACTCGCGCTAGCGGGCATCAGCCCAATCACGTTGCACGATGCCGTGATCGGTGCGATGGC
GGGGTATCTAGCGCTGTGGTCCGTCTACTGGCTGTTTAAACTGCTCACGGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGTTGTTGGCCGCGCTGGGCGCTTGGCTCGGATGGCAGCAGCTGCCGATCATCATTTTGATGTCTTCGGTGGTCGGCCTC
GTGTTTGGTCTGATTCAACTGCGCCTGCAAAAACGCGGCATAGATAAAGCCTTCCCGTTTGGCCCTTATCTGGCGATTGC
GGGCTGGCTGTCAGCGCTATACGGTCAGGCGATCGTTGGTTGGTATTTTCATTCCGTATTAGGATTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

79.167

99.654

0.789
  pilD Vibrio campbellii strain DS40M4

77.083

99.654

0.768
  pilD Acinetobacter nosocomialis M2

52.574

94.118

0.495
  pilD Acinetobacter baumannii D1279779

51.812

95.502

0.495
  pilD Neisseria gonorrhoeae MS11

47.584

93.08

0.443

Multiple sequence alignment