Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GSF71_RS01105 Genome accession   NZ_CP048116
Coordinates   232968..234707 (-) Length   579 a.a.
NCBI ID   WP_016265230.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MBEL1397     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 227968..239707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS01085 pdhA 227991..229100 (-) 1110 WP_162100800.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  GSF71_RS01090 - 229423..230106 (-) 684 WP_011374786.1 hypothetical protein -
  GSF71_RS01095 def 230612..231169 (+) 558 WP_011374787.1 peptide deformylase -
  GSF71_RS01100 rcrQ 231218..232981 (-) 1764 WP_162100801.1 ABC transporter ATP-binding protein Regulator
  GSF71_RS01105 rcrP 232968..234707 (-) 1740 WP_016265230.1 ABC transporter ATP-binding protein Regulator
  GSF71_RS01110 - 234735..235220 (-) 486 WP_016265231.1 hypothetical protein -
  GSF71_RS01115 - 235417..235629 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  GSF71_RS01120 rnjA 235634..237322 (+) 1689 WP_016265232.1 ribonuclease J1 -
  GSF71_RS01125 - 237455..238420 (+) 966 WP_016265233.1 diacylglycerol/lipid kinase family protein -
  GSF71_RS01130 thiW 238470..238976 (-) 507 WP_025015722.1 energy coupling factor transporter S component ThiW -
  GSF71_RS01135 tenA 238966..239652 (-) 687 WP_016265235.1 thiaminase II -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64667.15 Da        Isoelectric Point: 9.1434

>NTDB_id=367231 GSF71_RS01105 WP_016265230.1 232968..234707(-) (rcrP) [Latilactobacillus sakei strain MBEL1397]
MKLMWRYTIRYKKLLFWNFICVFGFILIELGLPTLLGQIIDKGINRHTVGPVWQYGTLMVVISLIGLVGLIGLAYTGSRL
TTNLTRDIRNDIFKKTMQFSHHEYGEFGVSSLITRTTNDAFQVTQFMVQVLRTGFMTPMMIVASAFMIVRTSLSLSWIVF
AAIPILLVGVVIIGWLSEPMSAEQQKNLDAINLNLRENLTGIRVIRAFVREKFQSMRFRKVNEAYSQSSIKLFTLVALAQ
PGFSFIFNIVFVLIIWQGAVQINTGHLAVGTLIAFIEYIFHVLFSFMLFASVFMMYPRAAVSAERIEKVLNSPVDITDDD
QGIQTTTTQGELAFENVSFAYPGPTESPVIRDVSFKAHPGETVAFIGSTGSGKSTLIQLIPRFFDVTRGQVMIDGYDVRD
YQLKALRQKIGFIPQKAVLFTGTIADNLRYGNPEATDAELWDALTIAQSKTFVAEKPDGLQTYLAEGGNNLSGGQKQRLA
IARAIVRRPDIYVFDDSFSALDYQTDAALRGALKSITKEATVLIVAQRVGTIMNADRIVVLNEGQVVGIGTHKELLKTNE
VYRAIAASQLSKEELNEEY

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=367231 GSF71_RS01105 WP_016265230.1 232968..234707(-) (rcrP) [Latilactobacillus sakei strain MBEL1397]
ATGAAATTAATGTGGCGCTATACCATTCGCTATAAAAAACTGTTATTTTGGAATTTTATCTGCGTATTTGGGTTTATTTT
AATTGAACTGGGATTACCAACATTATTAGGACAAATTATCGATAAAGGTATCAACCGCCATACGGTCGGGCCGGTTTGGC
AATATGGGACTTTAATGGTCGTCATTTCCCTGATTGGCCTAGTGGGTTTGATCGGCTTAGCCTACACGGGGAGTCGCTTA
ACCACTAATTTAACGCGTGATATCCGGAACGATATCTTTAAAAAAACGATGCAATTTTCACATCATGAATATGGTGAGTT
TGGCGTGTCTTCCTTAATTACTCGGACGACCAACGATGCGTTTCAAGTGACGCAATTCATGGTGCAAGTGTTACGAACGG
GTTTTATGACCCCGATGATGATCGTTGCCAGTGCGTTCATGATTGTGCGGACGAGTCTGTCATTATCATGGATTGTTTTT
GCAGCCATTCCGATTTTATTAGTTGGGGTGGTTATCATTGGTTGGTTATCCGAACCAATGTCTGCAGAACAACAAAAAAA
CTTAGATGCAATCAATTTAAACTTACGTGAAAATTTAACTGGGATTCGGGTTATTCGCGCATTTGTGCGTGAAAAATTCC
AGAGTATGCGTTTTAGAAAAGTTAATGAAGCCTACAGTCAGAGTTCAATCAAACTCTTTACATTAGTAGCCCTCGCACAA
CCTGGCTTTTCATTTATCTTCAATATTGTGTTCGTGTTAATCATTTGGCAAGGGGCGGTTCAAATTAATACCGGTCACTT
AGCAGTGGGGACGTTAATCGCCTTTATTGAATACATTTTCCATGTACTATTTTCATTCATGCTCTTTGCGAGTGTCTTCA
TGATGTACCCTAGAGCGGCTGTTTCAGCTGAACGGATTGAAAAAGTCCTTAATTCACCCGTAGATATTACGGATGATGAT
CAGGGGATTCAAACTACGACTACCCAAGGCGAATTGGCTTTTGAAAATGTGTCGTTTGCTTATCCTGGTCCGACAGAAAG
TCCGGTCATTCGGGATGTCAGTTTTAAAGCCCATCCTGGTGAAACTGTCGCCTTCATCGGTAGTACAGGGAGTGGTAAAT
CAACCTTAATTCAGTTGATTCCACGCTTTTTCGATGTGACGCGGGGGCAAGTGATGATTGATGGTTACGATGTTCGTGAT
TACCAATTGAAAGCATTACGCCAAAAAATTGGTTTTATTCCCCAAAAGGCGGTCCTCTTTACCGGCACGATTGCGGATAA
CTTGCGCTATGGTAATCCGGAAGCGACGGATGCTGAGTTATGGGATGCTTTAACGATTGCTCAATCCAAAACATTCGTGG
CGGAAAAACCAGACGGTCTCCAAACTTATTTGGCTGAAGGTGGTAACAACTTATCAGGTGGTCAAAAGCAACGACTAGCG
ATTGCCAGAGCAATTGTTCGTCGCCCAGACATCTACGTCTTTGACGATAGCTTTTCAGCCTTGGATTACCAAACAGACGC
AGCATTACGAGGCGCTTTAAAATCGATTACGAAAGAGGCAACCGTCTTAATTGTCGCCCAACGTGTGGGGACGATTATGA
ATGCAGATCGGATTGTCGTCTTAAATGAAGGACAAGTTGTGGGCATCGGTACCCACAAAGAATTACTTAAAACAAATGAG
GTTTACCGGGCCATTGCCGCCTCACAGTTGTCAAAGGAGGAGCTCAATGAAGAATATTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-283)

ABC transporter (ABC_tran)

(351-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.816

100

0.415

Multiple sequence alignment