Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GSF71_RS01100 Genome accession   NZ_CP048116
Coordinates   231218..232981 (-) Length   587 a.a.
NCBI ID   WP_162100801.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MBEL1397     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 226218..237981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS01080 - 227013..227989 (-) 977 Protein_215 alpha-ketoacid dehydrogenase subunit beta -
  GSF71_RS01085 pdhA 227991..229100 (-) 1110 WP_162100800.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  GSF71_RS01090 - 229423..230106 (-) 684 WP_011374786.1 hypothetical protein -
  GSF71_RS01095 def 230612..231169 (+) 558 WP_011374787.1 peptide deformylase -
  GSF71_RS01100 rcrQ 231218..232981 (-) 1764 WP_162100801.1 ABC transporter ATP-binding protein Regulator
  GSF71_RS01105 rcrP 232968..234707 (-) 1740 WP_016265230.1 ABC transporter ATP-binding protein Regulator
  GSF71_RS01110 - 234735..235220 (-) 486 WP_016265231.1 hypothetical protein -
  GSF71_RS01115 - 235417..235629 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  GSF71_RS01120 rnjA 235634..237322 (+) 1689 WP_016265232.1 ribonuclease J1 -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65172.71 Da        Isoelectric Point: 6.0646

>NTDB_id=367230 GSF71_RS01100 WP_162100801.1 231218..232981(-) (rcrQ) [Latilactobacillus sakei strain MBEL1397]
MKNIKVLKRLMRYIGPYKITFWSAITATVISVLANALWPFIMGLAVTEISQNLAQHVAVNFSYITKVIAMILSFALLYQT
MMFLGSFLMTRAVQHAMRDLRRDINLQMNALPVRFFDSQQQGNILSRVTNDVDAITNALQQSLIQVVTSILGIIMAVIMM
LTINLWMALLSLIMIPASLLISKAIIKKSQVYFQGQQNTLGEMNGYVQENYGGFSVLKLYGQEDRAVDEFAAITDRLTEF
GFKAAFISGIMMPLVGLTTNLTYAEMATLGGYYVLHGVITVGNLQAFIQYIWQINQPISQITQLSGVMQAAAAATQRVFE
ILDEPIEPTDQETAELPADVQGKVEFKDVSFSYDPAKPLIRDLSFTANPGDKIAIVGPTGAGKTTMINLLMRFYDVSSGQ
ILIDGVDTRQLSKQTVRSLFGMVLQDAWLYHTTITENIRFGKLDATEYEVVDAAKTANVDHFIHTLPNGYQMTIDEEADN
VSLGQKQLLTIARAVIANPKILILDEATSSVDTRLESLLQKAMEKVMQGRTSFVIAHRLSTIRDANLILVMDHGQIVEKG
THDDLLAANGVYAKLYNSQFAETKLNA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=367230 GSF71_RS01100 WP_162100801.1 231218..232981(-) (rcrQ) [Latilactobacillus sakei strain MBEL1397]
ATGAAGAATATTAAGGTGCTCAAACGCCTGATGCGCTATATTGGGCCTTATAAAATAACGTTCTGGTCAGCAATTACCGC
AACGGTGATTTCCGTTTTAGCGAATGCGTTGTGGCCATTTATCATGGGACTAGCAGTGACTGAAATTAGTCAAAACTTAG
CGCAACACGTCGCCGTTAACTTTAGTTACATTACTAAAGTCATCGCGATGATTCTCAGCTTTGCGTTACTTTATCAAACA
ATGATGTTTTTGGGATCGTTTTTAATGACGCGTGCAGTGCAACACGCAATGCGTGATTTACGGCGGGATATCAATCTACA
GATGAACGCTTTGCCAGTCCGTTTCTTTGATTCACAACAACAAGGTAATATCTTGTCGCGAGTTACCAATGATGTCGATG
CAATCACGAATGCCTTGCAACAGAGTTTAATTCAAGTTGTGACCTCAATTTTGGGAATCATTATGGCGGTTATCATGATG
TTGACGATTAATTTATGGATGGCTTTACTATCTTTAATTATGATTCCGGCCTCACTTTTGATTTCCAAAGCAATCATCAA
AAAGTCACAGGTTTACTTCCAGGGGCAACAAAATACCTTGGGTGAAATGAATGGTTATGTTCAGGAAAACTACGGTGGCT
TCAGTGTCTTGAAGTTGTATGGTCAAGAAGACAGAGCGGTTGATGAATTTGCAGCGATTACCGATCGATTGACTGAATTT
GGCTTCAAAGCGGCCTTTATTTCAGGAATCATGATGCCGTTAGTGGGTCTAACCACTAATCTAACCTATGCTGAGATGGC
AACCTTGGGTGGTTACTATGTCTTGCACGGGGTCATTACGGTTGGTAATTTACAGGCCTTTATTCAATATATTTGGCAGA
TTAATCAACCAATTTCGCAAATTACGCAGTTATCTGGTGTCATGCAAGCGGCTGCCGCTGCGACACAACGGGTTTTTGAA
ATCTTGGATGAACCTATTGAACCCACTGATCAAGAAACAGCTGAATTACCGGCTGACGTTCAGGGAAAAGTTGAATTTAA
AGATGTCAGCTTTAGCTATGATCCAGCCAAACCATTGATTCGGGATCTAAGTTTCACCGCCAATCCGGGTGATAAAATTG
CGATTGTTGGGCCAACCGGTGCTGGGAAGACGACCATGATTAATTTATTGATGCGTTTTTACGATGTTAGTTCTGGTCAA
ATCCTAATTGATGGCGTCGATACACGCCAGTTGAGTAAACAAACAGTTCGCTCACTCTTTGGGATGGTTCTTCAGGATGC
TTGGTTGTATCACACAACGATTACGGAAAATATTCGCTTTGGGAAGCTAGATGCCACTGAATATGAAGTCGTGGATGCTG
CCAAAACGGCTAATGTTGATCACTTTATCCATACATTGCCAAATGGCTATCAGATGACAATTGATGAAGAAGCGGATAAC
GTGTCGTTAGGACAAAAGCAACTCTTAACGATTGCTCGGGCAGTGATTGCTAATCCTAAAATTTTGATTTTAGATGAAGC
AACCAGTTCAGTCGATACGCGCTTAGAAAGCTTATTACAAAAGGCGATGGAAAAAGTGATGCAAGGACGAACAAGCTTTG
TGATTGCCCATCGCTTATCAACAATTCGGGATGCTAACTTAATTTTAGTGATGGATCACGGTCAAATTGTTGAAAAGGGA
ACACATGACGACTTATTAGCTGCTAATGGTGTTTACGCTAAGCTTTATAACAGTCAATTTGCAGAAACAAAATTAAATGC
ATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(361-509)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.906

99.659

0.428

Multiple sequence alignment