Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FGD67_RS13745 Genome accession   NZ_CP040755
Coordinates   3018523..3019770 (-) Length   415 a.a.
NCBI ID   WP_257171700.1    Uniprot ID   -
Organism   Colwellia sp. M166     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3013523..3024770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGD67_RS13720 (FGD67_13595) mutT 3015159..3015557 (+) 399 WP_257171696.1 8-oxo-dGTP diphosphatase MutT -
  FGD67_RS13725 (FGD67_13600) yacG 3015585..3015821 (-) 237 WP_257171697.1 DNA gyrase inhibitor YacG -
  FGD67_RS13730 (FGD67_13605) zapD 3015977..3016723 (-) 747 WP_257171698.1 cell division protein ZapD -
  FGD67_RS13735 (FGD67_13610) coaE 3016818..3017429 (-) 612 WP_257171699.1 dephospho-CoA kinase -
  FGD67_RS13740 (FGD67_13615) pilD 3017480..3018364 (-) 885 WP_373567771.1 A24 family peptidase Machinery gene
  FGD67_RS13745 (FGD67_13620) pilC 3018523..3019770 (-) 1248 WP_257171700.1 type II secretion system F family protein Machinery gene
  FGD67_RS13750 (FGD67_13625) pilB 3019957..3021663 (-) 1707 WP_257171701.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FGD67_RS13755 (FGD67_13630) - 3021789..3022256 (-) 468 WP_306556754.1 pilin -
  FGD67_RS13760 (FGD67_13635) nadC 3022691..3023578 (-) 888 WP_257171702.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FGD67_RS13765 (FGD67_13640) - 3023579..3024100 (-) 522 WP_257171703.1 TIGR02281 family clan AA aspartic protease -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 44967.04 Da        Isoelectric Point: 9.4161

>NTDB_id=367030 FGD67_RS13745 WP_257171700.1 3018523..3019770(-) (pilC) [Colwellia sp. M166]
MAAISSSRDKKKVKALDIYKWQGLNRKGKKVGGELNANNILELKAQLRKQGITPGRISKKAKPLFGIGGDKKILPVDIAV
LTRQIATMLGAGVPLVQTIEMIASGHNNGNMQKLLGNIGNKLQSGVPLSDCLREHPLYFDDLYCDLVNSGEQSGALETIY
DRVATYKEKAEALKAKIKKAMTYPISVLVIAFIVTAVLLIFVVPVFKDIFDSFGAELPGFTLLVLAISEFMQAYWYFGLA
GIFAAIYLFKKTHRASQSFRDSVDKKILKIPVIGDVLKKAAVARYARTLSTTFAAGVPLPDALESAAGASGNAVFREAIL
DIRAEVTSGMQMNLAMRNCAIFPDMVIQMVAIGEESGAVDDMLAKVATVYEQEVDNAVDNLTTLLEPMIMAVLGVVIGGL
IIAMYLPIFQIGMVV

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=367030 FGD67_RS13745 WP_257171700.1 3018523..3019770(-) (pilC) [Colwellia sp. M166]
ATGGCTGCTATTTCTTCATCAAGAGACAAGAAAAAAGTAAAAGCACTTGATATCTATAAGTGGCAAGGATTAAACCGCAA
AGGTAAAAAAGTTGGCGGTGAGCTCAATGCTAATAACATATTAGAGCTAAAAGCACAGTTACGTAAGCAAGGCATAACAC
CAGGCAGGATCAGTAAGAAAGCTAAACCTTTATTTGGTATCGGCGGCGATAAAAAAATATTGCCCGTTGATATTGCTGTA
CTTACCCGTCAAATTGCCACCATGCTAGGCGCCGGTGTCCCTTTAGTTCAAACCATTGAAATGATAGCTAGTGGCCATAA
CAATGGCAATATGCAAAAGCTATTAGGTAATATTGGCAACAAACTACAATCCGGAGTGCCATTATCAGATTGCTTGCGCG
AGCACCCACTTTATTTTGATGACTTATATTGTGACTTAGTCAATTCTGGTGAGCAATCTGGCGCCCTTGAAACCATCTAT
GATCGTGTTGCTACCTATAAAGAAAAAGCTGAGGCGTTAAAAGCTAAAATAAAAAAGGCTATGACCTACCCGATATCTGT
TTTAGTGATCGCCTTTATTGTTACTGCCGTACTTTTAATATTTGTCGTACCAGTATTTAAAGACATATTTGATAGTTTTG
GCGCAGAACTACCCGGCTTTACCTTATTAGTTCTGGCCATATCTGAATTTATGCAAGCCTACTGGTATTTTGGTCTTGCC
GGCATATTTGCAGCAATATACTTATTTAAAAAAACCCACCGTGCTAGCCAAAGTTTTCGTGATAGCGTCGATAAAAAAAT
ATTAAAAATTCCGGTTATAGGTGATGTTTTAAAAAAAGCAGCTGTCGCGCGCTATGCCAGAACCTTATCCACGACTTTTG
CCGCTGGCGTACCGTTACCTGATGCATTAGAATCAGCAGCGGGGGCTTCAGGCAATGCGGTATTTCGTGAGGCTATTTTA
GATATTCGTGCTGAAGTCACCTCTGGCATGCAAATGAATTTAGCGATGCGAAATTGCGCTATTTTTCCTGATATGGTGAT
CCAAATGGTCGCCATTGGTGAAGAGTCTGGCGCTGTCGATGATATGTTGGCAAAAGTGGCTACCGTTTATGAGCAAGAAG
TCGATAATGCCGTTGATAACTTAACCACCTTACTCGAGCCGATGATAATGGCCGTACTTGGCGTGGTCATCGGTGGCTTA
ATCATTGCTATGTATCTACCCATATTTCAAATTGGTATGGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(82-204)

Type II secretion system (T2SS), protein F (T2SSF)

(286-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.804

95.904

0.583
  pilC Acinetobacter baylyi ADP1

54.074

97.59

0.528
  pilC Acinetobacter baumannii D1279779

53.58

97.59

0.523
  pilC Legionella pneumophila strain ERS1305867

51.889

95.663

0.496
  pilC Vibrio cholerae strain A1552

44.949

95.422

0.429
  pilG Neisseria meningitidis 44/76-A

44.186

93.253

0.412
  pilG Neisseria gonorrhoeae MS11

44.186

93.253

0.412
  pilC Vibrio campbellii strain DS40M4

42.714

95.904

0.41

Multiple sequence alignment