Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FGD67_RS13740 Genome accession   NZ_CP040755
Coordinates   3017480..3018364 (-) Length   294 a.a.
NCBI ID   WP_373567771.1    Uniprot ID   -
Organism   Colwellia sp. M166     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3012480..3023364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGD67_RS13720 (FGD67_13595) mutT 3015159..3015557 (+) 399 WP_257171696.1 8-oxo-dGTP diphosphatase MutT -
  FGD67_RS13725 (FGD67_13600) yacG 3015585..3015821 (-) 237 WP_257171697.1 DNA gyrase inhibitor YacG -
  FGD67_RS13730 (FGD67_13605) zapD 3015977..3016723 (-) 747 WP_257171698.1 cell division protein ZapD -
  FGD67_RS13735 (FGD67_13610) coaE 3016818..3017429 (-) 612 WP_257171699.1 dephospho-CoA kinase -
  FGD67_RS13740 (FGD67_13615) pilD 3017480..3018364 (-) 885 WP_373567771.1 A24 family peptidase Machinery gene
  FGD67_RS13745 (FGD67_13620) pilC 3018523..3019770 (-) 1248 WP_257171700.1 type II secretion system F family protein Machinery gene
  FGD67_RS13750 (FGD67_13625) pilB 3019957..3021663 (-) 1707 WP_257171701.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FGD67_RS13755 (FGD67_13630) - 3021789..3022256 (-) 468 WP_306556754.1 pilin -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 32947.22 Da        Isoelectric Point: 7.6399

>NTDB_id=367029 FGD67_RS13740 WP_373567771.1 3017480..3018364(-) (pilD) [Colwellia sp. M166]
MTDFITLMSSSPTFFFSIVFIFSLLVGSFLNVVIYRLPKMLEQGWKRECREFLADELAKPTQPTNEALITLSTPSSTCPN
CQHKIRFYENIPLLSWLFLRAKCSQCQSRISLRYPLVELSTALLSMLIAAHYGTTLTTLFLLILTWGLVCLTLIDYDHML
LPDQITLPLLWLGLLVNINGAIVPLNDAVIGAVAGYMSLFSIFWLFKLVTGKDGMGHGDFKLVALFGAWIGWQLLPLLIL
MASAVGAVIGISLMVFKNHQREQAIPFGPYLAIAGFITLLWGNNIWSWYLSSLV

Nucleotide


Download         Length: 885 bp        

>NTDB_id=367029 FGD67_RS13740 WP_373567771.1 3017480..3018364(-) (pilD) [Colwellia sp. M166]
TTGACAGATTTCATTACCCTAATGAGCAGTTCTCCTACATTTTTCTTTTCGATTGTTTTTATTTTTTCTTTACTGGTAGG
CAGCTTTTTAAATGTGGTTATTTATCGCTTACCTAAAATGCTCGAACAAGGATGGAAACGTGAATGTCGAGAGTTTTTAG
CGGATGAACTTGCTAAGCCAACACAACCGACAAATGAAGCATTGATCACCCTATCAACACCAAGTTCTACCTGCCCAAAC
TGTCAGCACAAAATTCGCTTCTACGAAAATATTCCACTACTTAGTTGGTTATTTTTACGAGCTAAATGCAGCCAATGCCA
GTCAAGAATATCTTTACGTTATCCGTTAGTAGAGTTGAGCACTGCTTTATTAAGTATGCTCATCGCAGCCCATTATGGTA
CTACTTTAACCACGTTATTTTTGTTGATATTAACTTGGGGCTTGGTTTGTTTAACCTTAATAGACTACGACCACATGCTA
TTGCCAGATCAAATCACTTTACCACTATTATGGTTAGGACTTTTAGTTAATATTAATGGCGCAATTGTGCCATTAAATGA
TGCTGTTATTGGTGCGGTTGCCGGCTATATGAGCCTATTTAGCATTTTTTGGCTATTCAAGTTAGTTACTGGCAAAGACG
GTATGGGTCATGGTGACTTTAAATTAGTGGCATTATTTGGTGCTTGGATAGGTTGGCAGTTACTGCCATTACTCATTTTA
ATGGCCTCAGCTGTCGGCGCAGTGATAGGTATTAGTTTAATGGTCTTTAAAAACCACCAGCGAGAACAAGCTATTCCATT
TGGTCCTTACTTAGCAATCGCGGGTTTTATCACCTTACTATGGGGTAATAATATTTGGTCTTGGTATTTAAGTTCATTAG
TTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(142-251)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

51.761

96.599

0.5
  pilD Vibrio campbellii strain DS40M4

50.704

96.599

0.49
  pilD Acinetobacter baumannii D1279779

47.44

99.66

0.473
  pilD Acinetobacter nosocomialis M2

47.44

99.66

0.473
  pilD Neisseria gonorrhoeae MS11

46.263

95.578

0.442

Multiple sequence alignment