Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FF090_RS15655 Genome accession   NZ_CP040709
Coordinates   3304364..3305587 (+) Length   407 a.a.
NCBI ID   WP_138857607.1    Uniprot ID   -
Organism   Inhella inkyongensis strain IMCC1713     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3299364..3310587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF090_RS15630 rpmA 3300551..3300808 (-) 258 WP_138857604.1 50S ribosomal protein L27 -
  FF090_RS15635 rplU 3300836..3301147 (-) 312 WP_138857605.1 50S ribosomal protein L21 -
  FF090_RS15640 - 3301423..3302352 (+) 930 WP_138858419.1 polyprenyl synthetase family protein -
  FF090_RS15650 pilB 3302603..3304327 (+) 1725 WP_138857606.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FF090_RS15655 pilC 3304364..3305587 (+) 1224 WP_138857607.1 type II secretion system F family protein Machinery gene
  FF090_RS15660 - 3305588..3306517 (+) 930 WP_138857608.1 A24 family peptidase -
  FF090_RS15665 coaE 3306522..3307118 (+) 597 WP_246071441.1 dephospho-CoA kinase -
  FF090_RS15670 zapD 3307150..3307902 (+) 753 WP_138857610.1 cell division protein ZapD -
  FF090_RS15675 - 3307899..3308093 (+) 195 WP_138857611.1 DNA gyrase inhibitor YacG -
  FF090_RS15680 - 3308080..3308715 (-) 636 WP_175423689.1 HAD family phosphatase -
  FF090_RS15685 pgi 3308712..3310328 (-) 1617 WP_138857613.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44288.81 Da        Isoelectric Point: 9.1708

>NTDB_id=366717 FF090_RS15655 WP_138857607.1 3304364..3305587(+) (pilC) [Inhella inkyongensis strain IMCC1713]
MASANPAAKATQELVFEWEGKDRNGKVVRGETRSASEAVVSAQLRRQGILVSKIKKRRTSGGSSIKQKDIAVFTRQLATM
MRAGVPLLQSFDIVARGATNPRLTKLLNDIRQDVETGTSLSSAFRKHPIYFDALYCNLVEAGEAGGILEALLDRLAIYQE
KTVAIKNKIKSALTYPIAVLVVAFIVVAVIMIFVIPAFKEVFTSFGADLPAPTLFVIAMSEFFVAYWWLIFGSIGGGVYF
FLQSWKRSEKMQHTMDRLLLKVPVFGDLLYKSAIARWTRTLSTMFAAGVPLVEALDSVGGASGNAVFAEATEKIQREVST
GTTLTASMQGSGIFPTMVLQMCAIGEESGSLDHMLGKAAEFFEDEVDEAVKALSSLMEPFIIVILGTIIGGIVVSMYLPI
FKLGQVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=366717 FF090_RS15655 WP_138857607.1 3304364..3305587(+) (pilC) [Inhella inkyongensis strain IMCC1713]
ATGGCAAGCGCAAATCCGGCCGCCAAGGCTACGCAAGAACTGGTTTTTGAGTGGGAAGGCAAGGATCGCAACGGCAAAGT
GGTGCGCGGCGAGACCCGCTCGGCGAGCGAAGCCGTGGTGTCCGCCCAGTTGCGCCGCCAGGGCATCTTGGTGTCCAAGA
TCAAGAAGCGGCGCACCAGTGGCGGCTCGTCGATCAAGCAAAAAGACATCGCCGTCTTCACCCGCCAACTGGCGACCATG
ATGCGCGCCGGCGTTCCACTGCTGCAATCCTTTGACATCGTGGCTCGCGGTGCCACCAACCCGCGCCTGACCAAACTGCT
CAACGACATCCGCCAGGATGTGGAGACCGGCACCAGCCTGTCCTCTGCGTTTCGCAAGCACCCCATCTACTTCGACGCCC
TGTACTGCAACCTGGTCGAGGCCGGTGAGGCCGGCGGTATCTTGGAAGCGCTGCTGGATCGCTTGGCGATCTACCAAGAA
AAGACCGTCGCCATCAAGAACAAGATCAAATCGGCTCTGACCTATCCGATCGCGGTGCTGGTGGTGGCCTTCATCGTGGT
GGCGGTGATCATGATCTTTGTGATCCCTGCCTTCAAGGAAGTCTTCACATCTTTCGGCGCCGACCTGCCGGCACCCACGC
TATTCGTGATTGCGATGTCAGAGTTCTTTGTCGCCTACTGGTGGCTGATTTTTGGCAGCATCGGCGGCGGGGTCTACTTC
TTCCTGCAGAGTTGGAAGCGCAGCGAAAAGATGCAGCACACCATGGACCGCCTGTTGCTAAAGGTGCCCGTCTTTGGGGA
CCTGCTTTACAAATCCGCCATCGCCCGCTGGACTCGCACCCTTTCCACCATGTTCGCGGCTGGCGTCCCCTTAGTAGAGG
CGCTGGATTCAGTCGGGGGCGCCTCCGGCAATGCCGTGTTTGCCGAGGCCACCGAGAAAATCCAGCGTGAAGTTTCGACC
GGAACGACGTTGACAGCCTCCATGCAGGGTTCCGGCATCTTCCCCACCATGGTGCTGCAGATGTGCGCCATCGGCGAAGA
GTCCGGTTCACTCGATCACATGCTTGGCAAGGCCGCCGAGTTCTTCGAGGACGAAGTCGACGAAGCCGTGAAGGCCCTCT
CCAGCCTGATGGAGCCCTTCATCATCGTGATCCTGGGCACCATCATCGGCGGCATCGTGGTGTCGATGTACCTGCCGATC
TTCAAGCTGGGGCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.188

99.263

0.558
  pilG Neisseria meningitidis 44/76-A

54.135

98.034

0.531
  pilG Neisseria gonorrhoeae MS11

54.135

98.034

0.531
  pilC Legionella pneumophila strain ERS1305867

53.015

97.789

0.518
  pilC Acinetobacter baylyi ADP1

49.386

100

0.494
  pilC Acinetobacter baumannii D1279779

48.515

99.263

0.482
  pilC Vibrio cholerae strain A1552

40.887

99.754

0.408
  pilC Thermus thermophilus HB27

38.164

100

0.388
  pilC Vibrio campbellii strain DS40M4

39.401

98.526

0.388

Multiple sequence alignment