Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FDY98_RS10940 Genome accession   NZ_CP040451
Coordinates   2381193..2382425 (-) Length   410 a.a.
NCBI ID   WP_027959305.1    Uniprot ID   -
Organism   Halomonas sp. PA16-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2376193..2387425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDY98_RS10905 (FDY98_10960) - 2376244..2376617 (+) 374 Protein_2340 histone-like nucleoid-structuring protein, MvaT/MvaU family -
  FDY98_RS27790 - 2377221..2377352 (-) 132 WP_340146484.1 helix-turn-helix domain-containing protein -
  FDY98_RS10915 (FDY98_10970) - 2377907..2378266 (+) 360 WP_035537408.1 hypothetical protein -
  FDY98_RS10920 (FDY98_10975) - 2378290..2379177 (-) 888 WP_022523596.1 hypothetical protein -
  FDY98_RS10925 (FDY98_10980) yacG 2379217..2379450 (-) 234 WP_022523595.1 DNA gyrase inhibitor YacG -
  FDY98_RS10930 (FDY98_10985) coaE 2379486..2380075 (-) 590 Protein_2345 dephospho-CoA kinase -
  FDY98_RS10935 (FDY98_10990) pilD 2380155..2381000 (-) 846 WP_027959304.1 A24 family peptidase Machinery gene
  FDY98_RS10940 (FDY98_11000) pilC 2381193..2382425 (-) 1233 WP_027959305.1 type II secretion system F family protein Machinery gene
  FDY98_RS10945 (FDY98_11005) pilB 2382429..2384177 (-) 1749 WP_027959306.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FDY98_RS10950 (FDY98_11010) - 2384419..2384919 (+) 501 WP_196517982.1 pilin -
  FDY98_RS10955 (FDY98_11015) - 2385032..2385466 (+) 435 WP_027959308.1 anti-virulence regulator CigR family protein -
  FDY98_RS10960 (FDY98_11020) - 2385561..2386382 (+) 822 WP_027959309.1 inositol monophosphatase family protein -
  FDY98_RS27795 - 2386735..2386845 (-) 111 WP_309599316.1 IS66 family transposase zinc-finger binding domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44650.52 Da        Isoelectric Point: 10.6296

>NTDB_id=364578 FDY98_RS10940 WP_027959305.1 2381193..2382425(-) (pilC) [Halomonas sp. PA16-9]
MAKTARRRQTPAIKLARWKWIGKGPQDRALSGEMIGRSKAEVAAKLTKQNIVIRRISKKGNLGGNGRVNPNDVMVFARQM
ATMVRAGIPLLQALQVVAESLKKPAMVALMQQMISDVSSGSSFSDALNRHPKHFDRLFVNLVSAGEQSGALDQMLDRLAT
YKEKVESLKARVKKALWYPTTVMTIGIAVTMLLLIKVVPEFESMFQSFGAELPALTQLTVNLSGLAQRYWLAALGAVIAA
VLLLRISIQRSPNVAYRMHALLLRLPVIGDIVHKSAIARFSRTLATTFASGVPLVEGLDTAAGATGNKVYERAVAQTRQD
VATGQQLHFAMRMTNRFPPLAIQMVSIGEEAGSLDAMLNRVADYYEEEVDNKVDALTSLMEPVIIVVLGVLVGGVVVSMY
LPIFDLGAAL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=364578 FDY98_RS10940 WP_027959305.1 2381193..2382425(-) (pilC) [Halomonas sp. PA16-9]
ATGGCTAAAACGGCACGTCGACGCCAAACGCCCGCCATCAAGCTAGCGCGCTGGAAATGGATCGGTAAAGGCCCCCAGGA
TAGAGCGCTAAGCGGTGAGATGATTGGCCGCAGTAAAGCCGAAGTAGCCGCTAAACTCACCAAGCAAAATATCGTTATCC
GCCGGATTAGTAAAAAAGGCAACCTAGGCGGCAACGGCCGAGTTAACCCCAACGACGTTATGGTCTTTGCGCGCCAGATG
GCCACAATGGTTCGCGCCGGTATCCCCTTGCTACAGGCGCTTCAAGTGGTGGCAGAGAGCCTCAAAAAACCTGCTATGGT
TGCCCTAATGCAACAGATGATAAGCGATGTATCATCGGGCTCCAGCTTCTCTGATGCATTGAACCGCCACCCCAAACACT
TTGATCGCCTGTTTGTTAACCTGGTCAGCGCCGGCGAGCAGTCAGGTGCGCTGGATCAAATGCTTGATCGTCTTGCGACC
TATAAGGAGAAGGTTGAGTCGCTGAAAGCGCGAGTAAAAAAAGCGCTTTGGTACCCCACCACCGTTATGACGATTGGCAT
TGCTGTGACCATGTTGCTGTTGATTAAAGTGGTGCCTGAATTTGAAAGCATGTTCCAGAGCTTTGGTGCAGAGCTTCCAG
CACTGACCCAGTTGACCGTAAATTTATCCGGGCTTGCCCAGCGTTATTGGCTAGCGGCGCTCGGCGCGGTGATTGCTGCC
GTCCTACTACTCAGAATAAGCATTCAGCGCTCGCCTAATGTCGCTTACCGCATGCACGCTTTGCTGCTTCGGTTACCGGT
CATTGGCGACATCGTGCATAAATCCGCGATCGCGCGCTTTTCGCGCACGTTAGCGACTACCTTTGCCTCCGGTGTACCGC
TCGTAGAAGGCTTAGATACCGCCGCCGGTGCCACCGGCAATAAAGTGTACGAACGCGCGGTGGCACAAACGCGCCAGGAC
GTAGCCACCGGACAACAGCTACACTTCGCCATGCGGATGACCAACCGCTTTCCCCCCTTGGCAATCCAAATGGTCAGTAT
CGGTGAAGAAGCGGGGTCGCTGGATGCCATGCTTAATCGTGTTGCCGATTACTACGAAGAAGAAGTCGACAATAAGGTCG
ATGCTCTTACCTCGCTCATGGAGCCGGTTATTATTGTAGTACTGGGCGTGCTCGTTGGCGGTGTGGTTGTCTCTATGTAC
TTACCCATTTTCGACTTGGGCGCAGCCCTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.591

94.146

0.495
  pilC Acinetobacter baumannii D1279779

51.697

93.415

0.483
  pilC Pseudomonas stutzeri DSM 10701

47.87

97.317

0.466
  pilC Legionella pneumophila strain ERS1305867

47.044

99.024

0.466
  pilC Vibrio cholerae strain A1552

43.489

99.268

0.432
  pilG Neisseria meningitidis 44/76-A

43.5

97.561

0.424
  pilG Neisseria gonorrhoeae MS11

43.5

97.561

0.424
  pilC Vibrio campbellii strain DS40M4

42.506

99.268

0.422

Multiple sequence alignment