Detailed information NTG0364579

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: E3S92_RS01760
• Genome accession: NZ_CP047833
• Coordinates: 331178..331864 (+)
• Length: 228 a.a.
• NCBI ID: WP_000692885.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain UP_926
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 326178..336864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3S92_RS01745 (E3S92_01745)	-	326292..328922 (+)	2631	WP_160190098.1	valine--tRNA ligase	-
E3S92_RS01750 (E3S92_01750)	-	328935..330206 (+)	1272	WP_001108332.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
E3S92_RS01755 (E3S92_01755)	-	330474..331181 (+)	708	WP_000261124.1	prepilin peptidase	-
E3S92_RS01760 (E3S92_01760)	ysxA/radC	331178..331864 (+)	687	WP_000692885.1	RadC family protein	Machinery gene
E3S92_RS01765 (E3S92_01765)	-	331932..332216 (+)	285	WP_000171863.1	hypothetical protein	-
E3S92_RS01770 (E3S92_01770)	-	332331..332528 (-)	198	WP_000025835.1	hypothetical protein	-
E3S92_RS01775 (E3S92_01775)	-	332688..333161 (+)	474	WP_031928193.1	DUF4930 family protein	-
E3S92_RS01780 (E3S92_01780)	-	333235..333354 (+)	120	WP_000840600.1	hypothetical protein	-
E3S92_RS01785 (E3S92_01785)	mreC	333553..334395 (+)	843	WP_160190099.1	rod shape-determining protein MreC	-
E3S92_RS01790 (E3S92_01790)	mreD	334395..334925 (+)	531	WP_001259927.1	rod shape-determining protein MreD	-
E3S92_RS01795 (E3S92_01795)	rplU	335161..335469 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
E3S92_RS01800 (E3S92_01800)	-	335475..335795 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
E3S92_RS01805 (E3S92_01805)	rpmA	335807..336091 (+)	285	WP_160190100.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25293.20 Da
• Isoelectric Point: 6.7572

>NTDB_id=364579 E3S92_RS01760 WP_000692885.1 331178..331864(+) (ysxA/radC) [Staphylococcus aureus strain UP_926]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTIRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=364579 E3S92_RS01760 WP_000692885.1 331178..331864(+) (ysxA/radC) [Staphylococcus aureus strain UP_926]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCAGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCATCACAAGAAGATAT
CATAACAACAATAAGATTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (103-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377