Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LSE_RS06530 Genome accession   NC_013891
Coordinates   1333207..1334454 (+) Length   415 a.a.
NCBI ID   WP_012985595.1    Uniprot ID   -
Organism   Listeria seeligeri serovar 1/2b str. SLCC3954     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1328207..1339454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSE_RS06510 (lse_1310) yfmH 1329395..1330678 (+) 1284 WP_012985593.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LSE_RS06515 (lse_1311) ymfI 1330762..1331493 (+) 732 WP_003747611.1 elongation factor P 5-aminopentanone reductase -
  LSE_RS06520 (lse_1312) - 1331543..1332478 (+) 936 WP_012985594.1 RodZ family helix-turn-helix domain-containing protein -
  LSE_RS06525 (lse_1313) pgsA 1332563..1333141 (+) 579 WP_003747613.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LSE_RS06530 (lse_1314) cinA 1333207..1334454 (+) 1248 WP_012985595.1 competence/damage-inducible protein A Machinery gene
  LSE_RS06535 (lse_1315) recA 1334726..1335772 (+) 1047 WP_012985596.1 recombinase RecA Machinery gene
  LSE_RS06540 (lse_1316) rny 1336075..1337637 (+) 1563 WP_012985597.1 ribonuclease Y -
  LSE_RS06545 (lse_1317) - 1337754..1338251 (+) 498 WP_012985598.1 GNAT family N-acetyltransferase -
  LSE_RS06550 (lse_1318) - 1338256..1339059 (+) 804 WP_012985599.1 TIGR00282 family metallophosphoesterase -
  LSE_RS06555 (lse_1319) - 1339076..1339438 (+) 363 WP_041176172.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45717.16 Da        Isoelectric Point: 6.1220

>NTDB_id=36446 LSE_RS06530 WP_012985595.1 1333207..1334454(+) (cinA) [Listeria seeligeri serovar 1/2b str. SLCC3954]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPERLKEVIKIAENRSDILIFTGGLGPTEDDITKQ
ILAKHLKKDLVTDQFHMNKITEYFTSRSRTMTENNKLQAVIIKGSTVLNNDYGFAAGMFLKENNHTYILLPGPPSEMKPM
FTRYANPLIVNENGEKTILESKILRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRVTATAKTKKEAAKLVNET
EQEILRRDGTFLYGYGEVSLPELVTAMLLERKITISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSAETKQSILEVSS
QVIKEKGVVSSECASEMADNVRRLCNTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKDHQTEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDANA

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=36446 LSE_RS06530 WP_012985595.1 1333207..1334454(+) (cinA) [Listeria seeligeri serovar 1/2b str. SLCC3954]
ATGGCAAGTGCAGAAATTATTGCTGTCGGAACAGAGTTATTATTAGGACAAATTGTTAATTCGAATGCTGCTTTTATATC
ACAAGAATTAGCGGCTGACGGAATTTATGTATATCATCATACTGTTGTTGGAGACAATCCTGAACGCTTAAAGGAAGTAA
TAAAAATTGCTGAAAATAGAAGTGATATCTTAATTTTCACGGGCGGACTTGGACCAACAGAAGATGATATTACCAAACAA
ATTTTAGCAAAACATTTAAAAAAAGATTTAGTAACTGATCAATTTCATATGAATAAAATTACCGAATATTTTACTTCGAG
AAGTCGAACGATGACTGAAAATAACAAATTACAAGCTGTTATTATTAAAGGATCAACAGTTTTAAACAATGACTATGGTT
TTGCAGCTGGAATGTTCTTAAAAGAAAATAACCATACATATATTTTACTACCTGGACCTCCTTCTGAAATGAAACCGATG
TTTACACGTTATGCCAATCCGCTAATTGTTAATGAGAATGGCGAAAAAACCATTTTAGAATCTAAAATATTACGATTTTT
TGGTATTGGCGAATCACAATTAGCTGCTGATTTAAATGATTTAATTGTCACTCAAGTAAACCCTACAATTGCTACTTATG
CTGGTGATAATGAAGTAGTCGTACGTGTAACGGCAACTGCGAAAACAAAAAAAGAAGCCGCGAAACTTGTTAATGAAACG
GAACAAGAAATTCTTCGTCGTGATGGGACTTTCCTATATGGTTACGGAGAAGTATCTTTGCCAGAATTAGTAACAGCCAT
GCTACTCGAACGAAAAATTACTATTTCTGCTGCCGAAAGTTTTACTGCTGGCTTGTTTCAAGCAGAAATTGCTCGTTTTC
CAGGTATTTCCAAGATTTTTAAAGGTGGAATGGTCACTTATAGCGCAGAAACGAAACAATCTATTTTGGAAGTTTCCTCG
CAAGTAATTAAAGAAAAAGGCGTGGTTAGCTCAGAATGCGCAAGCGAAATGGCAGATAATGTGCGACGTCTTTGCAATAC
AGATATAGGGATTAGCTTTACAGGTGTTGCAGGACCAGATAGTTTAGAAGGTCATCCTGCTGGTACTATATGGATTGGTC
TAAGTGTTAAAGATCATCAAACAGAAGCTTATCAGTTCGTTTACGGAAGAGATCGAAATCATAATCGTCGCCGGGCTGTA
AAACAAGGATTTCAATTGATTAAGCAATTTTTAGATGCGAATGCCTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.856

98.554

0.501
  cinA Streptococcus pneumoniae TIGR4

48.81

100

0.494
  cinA Streptococcus mitis SK321

48.926

100

0.494
  cinA Streptococcus mutans UA159

49.757

99.277

0.494
  cinA Streptococcus pneumoniae Rx1

48.095

100

0.487
  cinA Streptococcus pneumoniae R6

48.095

100

0.487
  cinA Streptococcus pneumoniae D39

47.857

100

0.484
  cinA Streptococcus mitis NCTC 12261

47.971

100

0.484
  cinA Streptococcus suis isolate S10

38.592

99.277

0.383

Multiple sequence alignment