Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LSE_RS06535 Genome accession   NC_013891
Coordinates   1334726..1335772 (+) Length   348 a.a.
NCBI ID   WP_012985596.1    Uniprot ID   -
Organism   Listeria seeligeri serovar 1/2b str. SLCC3954     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1329726..1340772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSE_RS06515 (lse_1311) ymfI 1330762..1331493 (+) 732 WP_003747611.1 elongation factor P 5-aminopentanone reductase -
  LSE_RS06520 (lse_1312) - 1331543..1332478 (+) 936 WP_012985594.1 RodZ family helix-turn-helix domain-containing protein -
  LSE_RS06525 (lse_1313) pgsA 1332563..1333141 (+) 579 WP_003747613.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LSE_RS06530 (lse_1314) cinA 1333207..1334454 (+) 1248 WP_012985595.1 competence/damage-inducible protein A Machinery gene
  LSE_RS06535 (lse_1315) recA 1334726..1335772 (+) 1047 WP_012985596.1 recombinase RecA Machinery gene
  LSE_RS06540 (lse_1316) rny 1336075..1337637 (+) 1563 WP_012985597.1 ribonuclease Y -
  LSE_RS06545 (lse_1317) - 1337754..1338251 (+) 498 WP_012985598.1 GNAT family N-acetyltransferase -
  LSE_RS06550 (lse_1318) - 1338256..1339059 (+) 804 WP_012985599.1 TIGR00282 family metallophosphoesterase -
  LSE_RS06555 (lse_1319) - 1339076..1339438 (+) 363 WP_041176172.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37951.01 Da        Isoelectric Point: 4.7554

>NTDB_id=36447 LSE_RS06535 WP_012985596.1 1334726..1335772(+) (recA) [Listeria seeligeri serovar 1/2b str. SLCC3954]
MNDRQAALEQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT
KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKR
VREEYEIDGASKEPLEETEETLSLLDDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=36447 LSE_RS06535 WP_012985596.1 1334726..1335772(+) (recA) [Listeria seeligeri serovar 1/2b str. SLCC3954]
GTGAATGATCGTCAAGCGGCATTAGAACAAGCTTTAAAACAAATTGAAAAACAATTCGGTAAAGGTTCCATTATGAAATT
AGGGGAGCACTCAGACCAAAATATATCTACTATTTCTAGTGGTTCATTAGCATTAGATATTGCTTTAGGAGTTGGCGGAT
ACCCAAGAGGTCGTATTATTGAAGTATACGGACCAGAAAGTTCTGGTAAGACAACTGTTGCACTACACGCTATTGCAGAA
GTACAAGCGCAAGGCGGCACAGCAGCATTTATTGATGCCGAACACGCTTTAGATCCAGCATATGCGAAGAATCTTGGTGT
TAATATTGATGAGTTACTATTATCGCAACCAGACACAGGAGAACAAGCTCTAGAGATTGCAGAAGCATTAGTACGGAGTG
GCGCAGTCGATATGTTAGTTATTGACTCTGTTGCAGCTCTTGTACCTCGCGCTGAAATCGAAGGCGAAATGGGAGATGCA
CATGTTGGTTTGCAAGCACGTTTAATGTCACAAGCATTACGTAAACTTTCCGGAGCAATCAATAAATCCAAAACTATCGC
GATCTTTATCAACCAAATTCGAGAAAAAGTTGGCGTTATGTTCGGAAACCCAGAAATCACACCAGGTGGTCGTGCACTGA
AATTCTATTCCACTGTTCGGTTAGAAGTAAGACGTGCAGAACAATTGAAACAAGGTACAGATGTAATGGGTAACAAAACG
AAAATCAAAGTAGTAAAAAACAAAGTAGCGCCACCATTCCGTATCGCTGAAGTAGATATTATGTACGGAGAAGGTATTTC
ACGTGAAGGCGAGCTTGTTGATATGGCTGCTGAAGTTGATGTAATCAATAAGAGTGGTTCATGGTATTCTTATAAAGAAG
AGCGTATCGGTCAAGGCCGCGAAAATGCCAAGCAATACTTGAAAGAACACACGGATATTCGTGATGAAATTTCCAAACGT
GTTCGTGAAGAATACGAAATTGACGGAGCTAGCAAAGAGCCTCTTGAAGAAACAGAAGAAACTTTAAGTTTGCTAGACGA
TGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.146

94.253

0.793
  recA Latilactobacillus sakei subsp. sakei 23K

77.011

100

0.77
  recA Streptococcus pneumoniae D39

70.783

95.402

0.675
  recA Streptococcus pneumoniae R6

70.783

95.402

0.675
  recA Streptococcus pneumoniae TIGR4

70.783

95.402

0.675
  recA Streptococcus pneumoniae Rx1

70.783

95.402

0.675
  recA Streptococcus mitis NCTC 12261

69.88

95.402

0.667
  recA Streptococcus mitis SK321

69.277

95.402

0.661
  recA Streptococcus pyogenes NZ131

69.512

94.253

0.655
  recA Streptococcus mutans UA159

68.598

94.253

0.647
  recA Lactococcus lactis subsp. cremoris KW2

68.502

93.966

0.644
  recA Vibrio cholerae strain A1552

61.159

99.138

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.159

99.138

0.606
  recA Neisseria gonorrhoeae strain FA1090

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Helicobacter pylori 26695

59.942

98.276

0.589
  recA Helicobacter pylori strain NCTC11637

59.942

98.276

0.589
  recA Acinetobacter baylyi ADP1

58.96

99.425

0.586
  recA Acinetobacter baumannii D1279779

59.475

98.563

0.586
  recA Ralstonia pseudosolanacearum GMI1000

66.019

88.793

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.702

94.54

0.583
  recA Pseudomonas stutzeri DSM 10701

60.059

97.126

0.583
  recA Glaesserella parasuis strain SC1401

63.323

91.667

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.813

91.954

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.912

95.115

0.56

Multiple sequence alignment