Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJM1_RS05220 Genome accession   NC_017280
Coordinates   1016682..1017233 (+) Length   183 a.a.
NCBI ID   WP_002877747.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1011682..1022233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJM1_RS05185 (CJM1_1040) - 1011872..1012297 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  CJM1_RS05190 (CJM1_1041) - 1012362..1012982 (+) 621 WP_014517039.1 NAD(P)H-dependent oxidoreductase -
  CJM1_RS05195 (CJM1_1042) - 1012982..1013587 (+) 606 WP_014517040.1 NAD(P)H-dependent oxidoreductase -
  CJM1_RS05200 (CJM1_1043) pgsA 1013712..1014248 (+) 537 WP_002877743.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CJM1_RS05205 (CJM1_1044) rseP 1014245..1015351 (+) 1107 WP_002877745.1 RIP metalloprotease RseP -
  CJM1_RS05210 - 1015344..1016209 (+) 866 Protein_997 VirK family antimicrobial peptide resistance protein -
  CJM1_RS05215 (CJM1_1047) rpsF 1016296..1016673 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  CJM1_RS05220 (CJM1_1048) ssb 1016682..1017233 (+) 552 WP_002877747.1 single-stranded DNA-binding protein Machinery gene
  CJM1_RS05225 (CJM1_1049) rpsR 1017244..1017504 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  CJM1_RS05230 (CJM1_1050) lon 1017565..1019940 (-) 2376 WP_014517043.1 endopeptidase La -
  CJM1_RS05235 (CJM1_1051) - 1019957..1020604 (-) 648 WP_014517044.1 outer membrane protein assembly factor BamD -
  CJM1_RS05240 (CJM1_1052) fliW 1020765..1021154 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  CJM1_RS05245 (CJM1_1053) proC 1021154..1021885 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  CJM1_RS05250 (CJM1_1054) ctsT 1021882..1022184 (+) 303 WP_002877750.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20770.66 Da        Isoelectric Point: 5.0431

>NTDB_id=36447 CJM1_RS05220 WP_002877747.1 1016682..1017233(+) (ssb) [Campylobacter jejuni subsp. jejuni M1]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=36447 CJM1_RS05220 WP_002877747.1 1016682..1017233(+) (ssb) [Campylobacter jejuni subsp. jejuni M1]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
GGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372

Multiple sequence alignment