Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SYNGTS_RS12680 Genome accession   NC_017277
Coordinates   2717780..2719030 (+) Length   416 a.a.
NCBI ID   WP_010873634.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2712780..2724030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNGTS_RS12665 (SYNGTS_2441) - 2715552..2715980 (-) 429 WP_010873631.1 hypothetical protein -
  SYNGTS_RS12670 (SYNGTS_2442) pyrR 2715994..2716530 (-) 537 WP_010873632.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  SYNGTS_RS12675 (SYNGTS_2443) folE 2716867..2717571 (+) 705 WP_010873633.1 GTP cyclohydrolase I FolE -
  SYNGTS_RS12680 (SYNGTS_2444) cinA 2717780..2719030 (+) 1251 WP_010873634.1 competence/damage-inducible protein A Machinery gene
  SYNGTS_RS12685 (SYNGTS_2445) - 2719067..2719519 (-) 453 WP_010873635.1 YraN family protein -
  SYNGTS_RS12690 (SYNGTS_2446) - 2719546..2721051 (-) 1506 WP_010873636.1 hypothetical protein -
  SYNGTS_RS17790 - 2721061..2721186 (+) 126 WP_255345203.1 hypothetical protein -
  SYNGTS_RS12695 (SYNGTS_2447) - 2721248..2722855 (+) 1608 WP_010873637.1 SpoIID/LytB domain-containing protein -
  SYNGTS_RS12700 (SYNGTS_2448) - 2722892..2723236 (+) 345 WP_010873638.1 rhodanese-like domain-containing protein -
  SYNGTS_RS12705 (SYNGTS_2449) - 2723465..2723920 (+) 456 WP_010873639.1 RNA-binding protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44707.05 Da        Isoelectric Point: 4.7299

>NTDB_id=36370 SYNGTS_RS12680 WP_010873634.1 2717780..2719030(+) (cinA) [Synechocystis sp. PCC 6803]
MAAEIICVGTELLLGEILNSNSQYLAQELARLGIPHYFQTVVGDNPERIKRAIAIARERAQILIFTGGLGPTPDDLTTET
IADFFRTPLQENIAVIADIEAKFAQTGRPMAANNRKQALLPLGAELLANATGTAPGMIWHPQPDLLILTFPGVPSEMRQM
WQGVAVPYLQSQGWGKTTIYSRVLRFQGIGESALAEKVTDFFTLTNPTVAPYAGKGEVRLRISCPASSEALAKEIIDPIA
EEIKAIAGLDYFGQDEDTIASVVGALLRERGETVAVAESCTGGGLGALLTDQPGSSDYFWGGVIAYYNQVKIKLLGVDPE
IIEYCGAVSEATAEAMALGVKERLGTDWGIAITGIAGPGGGTEEKPIGTVYVGLADPHGQASHILLQFGDRRGREWIRYL
SACQALDHLRRRLQSS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=36370 SYNGTS_RS12680 WP_010873634.1 2717780..2719030(+) (cinA) [Synechocystis sp. PCC 6803]
ATGGCGGCTGAGATTATCTGTGTTGGCACCGAGTTATTGCTGGGGGAAATCCTTAACAGTAATAGTCAATATTTAGCCCA
GGAGTTGGCCCGCCTTGGCATTCCCCATTATTTTCAAACGGTGGTGGGGGATAATCCGGAGCGCATCAAACGGGCGATCG
CCATTGCCCGGGAACGGGCCCAAATTCTCATTTTTACTGGGGGATTAGGGCCTACCCCGGACGATTTGACCACGGAAACC
ATAGCGGATTTTTTCCGGACTCCTTTACAGGAAAACATCGCTGTTATTGCCGATATTGAAGCAAAATTTGCCCAAACGGG
GCGCCCCATGGCCGCCAATAATCGTAAGCAAGCTCTGCTTCCCCTGGGGGCAGAATTATTGGCCAATGCAACGGGAACGG
CCCCAGGCATGATTTGGCATCCCCAACCGGACCTATTGATTTTGACTTTCCCTGGGGTGCCATCAGAAATGCGTCAAATG
TGGCAAGGGGTGGCGGTGCCCTATCTACAAAGCCAGGGCTGGGGAAAAACCACCATCTACAGCCGAGTGTTGCGCTTTCA
GGGCATTGGCGAATCGGCCCTGGCAGAAAAAGTAACGGATTTTTTCACTTTGACCAATCCCACCGTGGCCCCCTATGCCG
GTAAAGGGGAAGTGCGTTTGAGAATTTCCTGTCCCGCTTCTTCGGAAGCCCTGGCCAAAGAAATTATTGATCCAATAGCA
GAGGAAATTAAGGCGATCGCCGGTTTGGACTATTTTGGCCAGGATGAAGATACCATTGCGTCGGTGGTGGGGGCCCTGTT
GCGAGAACGGGGAGAAACCGTAGCGGTGGCGGAATCCTGCACAGGCGGCGGTTTAGGAGCTTTGTTGACCGATCAACCAG
GCAGTTCTGACTACTTCTGGGGCGGAGTCATTGCCTACTATAATCAGGTGAAAATTAAACTTCTCGGGGTGGATCCGGAA
ATCATTGAATACTGTGGGGCGGTTAGTGAAGCCACAGCGGAGGCGATGGCCCTGGGAGTGAAAGAAAGACTGGGTACAGA
TTGGGGCATTGCCATTACCGGCATTGCTGGCCCCGGTGGTGGGACGGAGGAAAAACCTATTGGTACAGTGTACGTTGGCC
TGGCGGATCCCCATGGTCAAGCTAGCCATATCTTGTTGCAATTTGGCGATCGCCGGGGACGGGAATGGATTAGATATTTG
AGTGCTTGCCAAGCATTGGATCATCTGCGGCGGCGTTTACAGAGTAGCTGA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-253)

Competence-damaged protein (CinA)

(257-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(4-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

39.578

100

0.406
  cinA Streptococcus mitis NCTC 12261

39.344

100

0.404
  cinA Streptococcus mutans UA159

39.573

100

0.401
  cinA Bacillus subtilis subsp. subtilis str. 168

42.092

94.231

0.397
  cinA Streptococcus pneumoniae TIGR4

38.14

100

0.394
  cinA Streptococcus pneumoniae R36A

37.907

100

0.392
  cinA Streptococcus pneumoniae Rx1

37.907

100

0.392
  cinA Streptococcus pneumoniae R6

37.907

100

0.392
  cinA Streptococcus pneumoniae D39

37.674

100

0.389
  cinA Streptococcus suis isolate S10

36.62

100

0.375

Multiple sequence alignment